LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g02158	TGCTTAGTGCTTACTGCATACATACTTGGCTCACTGTTCTAACAAAACACTCTTTCATTCTCATCACTCATCACTCATTTCAAAGCTTCATTTCTTCTTCATTCGTTTGTTTAGGAATTGGTTCTAGAATGCATTGAAGAGAAGTGGTTCTGTGAGAGTGTTTGGTTTTGGAAGATAACATGGATATAGCCTTTGGGTTACCAAAGTCCAATGTGGTATTGGATGGTTTGGATTCTTGTATTGTATTTGGAGGGAGAGGTTTTGGTTGTGCTTTTCTCGGCAACTCGAGGACCATTTCGAAAGCTCGGTTCAGTAGGGTGAACAAGATAGGTAGAAGGAGTAGTTCAAGAGTAGAATGCGTAGGAGAGTTGAAAGTTTCAAATGGGAAGAGGAGTTTGTGTTGGAATAGTGATAAATTTTTTAGGGGAAATAGGGAAATTTGGTCAAACTGTCAGGGTAATGATTCTTTATCATTTGTCAATGGCAATGGCCGGAATGTTGATAGAGTGGGAGGTTCGGGTGAGGATTCTGATTTGAGAACTATTTCCAGTGCAGAATTGAGCGAACCTTTGGGAGAAGAAGAAGGGCAAGGAGGGAGGAAAGGAGTTGACGGTGAAGTAGAAGTAGAAGTTCAAAATGTGGATGAATTGAAAGAACTGTTGCAAAAGGCCATGAAAGAATTAGAAGCGGCTCGAATTAACAGCATCATGTTTGAGGAAAAGGTTAAGAAGATATCGGAGACTGCAATATCTTTGCAGGATGAAGCGGCAAGTGCTTGGAATAATGTTACCTCTACCCTTGATGTCATCCAAGATATTGTCGGTCAAGAATTTGTTGCCAAAGAAGCTGTTCAGAAGGCAACCATGGCTCTTTCTCTGGCTGAGGCTAGGCTTCAAGTAGCCATAGATTCTTTGGAGGTTACGAAAGAAGTTTATGATTCCTCACAAGTTTCTAAGAAGAGTGATGGTGATAAAGATATAATGCAAGAGGAGAAAGAACTTTTGGTTGCCCAGGATGATATCAGGGAATGCCAGACAAAATTAGCAAATTGTGAGAATGATCTGAGATGCTTGCAATCTAGAAAGGAGGAGTTGCAAAATGAAGTGAACAAATTGCATGAAATAGCAGAACAGGCACAGCTGAAAGCAGCAAAAGCAGAAGAAGATGTTGCAAACATAATGCTTTTAGCAGAGGAAGCTGTTGCTGCTGAACTTGAGGCTGCACAATGCATGAATGATGCAGAGATTGCATTACAGAAAGCAGACAAATCTGCCTCTAATTTTAACGCTGATACCAAAGACACTCTAGACATACAAGATGTCGAGGCTGTTCCTTACGGGGAGGAAATGGTTCAAAATTCTTCTGGTGATGATGCTGATAAAAGAGAGCTTGATTTTGCAATCAATGATGAGCCTTTGCTTGCCATGCAATCTACAGAATCACAATCTGATAACATCAGCCAAAGTTTGGAAGACATGGCACAGTTTGCTTATCTGAGTGATCATGAGAATGGACAGTTAAGCTTAGACTCTTCTAAAGAAGCTGAAATTGAAACAGATAAGTCAAAGAATGTAGTTATTACAAAAAAGCAGGAAACACAGAAAGATATGACTAGAGATAATTCACCATTTCATCCTAAGACTAAGAAGTCTTCCCGATTTTTTCCAGCATCATTCTTCTCTTTTACTGCAGATGAAACTGATTACACACCAGCATCAGTTTTCCATGGTTTTCTGGAGTCTGCACAGAAACAATTACCCAAACTGGTTGTTGGGTTATTGTTAATTGGAGCAGGGCTTGTGTTCTATGCCAATAGAACAGAGAGGAGTGGTCAGCTGCTTCAGCAGCCGGAAGCGATTTCAACCACTGTTGAAGAAGTTTCTTCAACTGCGAAGCCTCTGGTTAGACAGCTTCAGGAGCTTCCCAGGAGAATTAAGAAAATTATTGCATTATTACCTGATCAAGAGGTGGATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGCTACTACTTGCTAGTGTTGTATTTGTACCGATATTTCAAAAGATTCCTGGAGGCAGTCCTGTTCTCGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCAATCATTCGTCATGTTCATGGGACAAAAGCAATAGCTGAGTTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTTTGGTGACTGCTATAGTTGTTGGCTTGGTGGCACATTATGTATGTGGTTATGCTGGTCCTGCTGCTATTGTCATTGGGAATGGCTTGGCATTATCATCAACTGCTGTTGTTCTGCAGGTGTTACAGGAGAGAGGTGAGAGCACATCACGTCATGGAAGGGCTACATTCTCTGTTTTGCTTTTTCAGGATTTGGCTGTTGTTGTTTTGCTAATACTCATTCCTCTTGTTTCACCTAATTCTTCTAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCCGCAGTTAAGGCAGTGGTTGCCATTGCAGCCATAATTGCAGGTGGACGATTGCTCCTTCGACCCATATATAAGCAGATAGCAGAGAATCAAAATGCTGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGGCTGGACTTTCCATGGCATTGGGGGCTTTTTTGGCTGGCTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTATTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTTAAACTTTCCAGTCATTACTGGGACCTTGGGACTTTTGATATGTGGCAAGACTTTGTTGGTTTCTTTAATCGGCAGAATATTTGGTATTTCTCTCATTTCTGCCGTTAGAGTGGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGTTGTCCTCTTTACTGTTTCTTGTTGTGGGAATTTCAATGGCCCTCACTCCATGGCTAGCTGAAGGAGGCCAGCTCCTTGCTTCCCGTTTTGAGCTGCATGATGTTCGAAGTTTACTACCTGTAGAAAGTGAGACAGATGATCTGCAAAATCACATCATTATTTGTGGATTTGGACGAGTTGGGCAGATCATTGCACAACTTCTTTCTGAGCAACTTATTCCTTTTGTTGCACTAGATGTGAGAAGTGATAGAGTGGCAATTGGGCGTTCCCTGGATCTCCCTGTATACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACACAAGGTTGGGGCTGAAAGGGCAAGTGCTGCTGCAGTAACTCTAGATTCCCCTGGAGCAAACTATAGAACAGTTTGGGCCCTGAGTAAGCACTTCCCAAACGTGAAGACTTTTGTTCGCGCTCATGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCAACCGCTGTTGTTCCTGAGACCTTGGAACCAAGTCTTCAGCTAGCAGCTGCCGTCCTTGCTCAGGCTAAGCTTCCTACATCGGAGATTGCAGCAACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTAACTGAAGTACGTGTTTCTTTTCATCACATGCATACAAACATTAACAATGGCTATCTATCAACTCTGATATTACCCTATCTGAAACAAATGGAAGTTCTTTTGGATACGGATATAATAGAATTACTAGCAAATCCAAATCTCAATCCCCAGAATCACCAGATGATACTCAAGTCTCTGAAGGGAAACTGGCGACATGAAGATTATCCCATATATACAAACTGGAAGGTACAAGAAAACAGAAAATTGAAAAATTGTATAGCAGCAGTGTAGATGTTCCATCATTGTGTACATTATACAGAAATATATCTGCATCAAAATTTTGACTAAATCATCCTTAAATTTCAGCTGAGGATGATGTTCCTGATGTATGTAGCATTGATTTTGTTTTATATTCTTTGGCTTTGGAAAAGCATGTATAATATGTCATTGTATTTCCATTATTTATCAAGAGTGTGACATCCTTATTCCCTAACTAA	4153	0.4134	MDIAFGLPKSNVVLDGLDSCIVFGGRGFGCAFLGNSRTISKARFSRVNKIGRRSSSRVECVGELKVSNGKRSLCWNSDKFFRGNREIWSNCQGNDSLSFVNGNGRNVDRVGGSGEDSDLRTISSAELSEPLGEEEGQGGRKGVDGEVEVEVQNVDELKELLQKAMKELEAARINSIMFEEKVKKISETAISLQDEAASAWNNVTSTLDVIQDIVGQEFVAKEAVQKATMALSLAEARLQVAIDSLEVTKEVYDSSQVSKKSDGDKDIMQEEKELLVAQDDIRECQTKLANCENDLRCLQSRKEELQNEVNKLHEIAEQAQLKAAKAEEDVANIMLLAEEAVAAELEAAQCMNDAEIALQKADKSASNFNADTKDTLDIQDVEAVPYGEEMVQNSSGDDADKRELDFAINDEPLLAMQSTESQSDNISQSLEDMAQFAYLSDHENGQLSLDSSKEAEIETDKSKNVVITKKQETQKDMTRDNSPFHPKTKKSSRFFPASFFSFTADETDYTPASVFHGFLESAQKQLPKLVVGLLLIGAGLVFYANRTERSGQLLQQPEAISTTVEEVSSTAKPLVRQLQELPRRIKKIIALLPDQEVDEEEASLFDMLWLLLASVVFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAIVVGLVAHYVCGYAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLVSPNSSKGGVGFQAIAEALGLAAVKAVVAIAAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVLNFPVITGTLGLLICGKTLLVSLIGRIFGISLISAVRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAEGGQLLASRFELHDVRSLLPVESETDDLQNHIIICGFGRVGQIIAQLLSEQLIPFVALDVRSDRVAIGRSLDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLAELTEVRVSFHHMHTNINNGYLSTLILPYLKQMEVLLDTDIIELLANPNLNPQNHQMILKSLKGNWRHEDYPIYTNWKVQENRKLKNCIAAV	1255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g02158	1255	Gene3D	-	1008	1172	-	-
	Pste6g02158	1255	FunFam	K(+) efflux antiporter 2 chloroplastic	600	986	-	-
	Pste6g02158	1255	FunFam	K(+) efflux antiporter 2 chloroplastic	1008	1172	-	-
	Pste6g02158	1255	Coils	Coil	267	336	-	-
	Pste6g02158	1255	NCBIfam	monovalent cation:proton antiporter-2 (CPA2) family protein	611	891	IPR004771	GO:0006812\|GO:0008324\|GO:0016020
	Pste6g02158	1255	Coils	Coil	147	174	-	-
	Pste6g02158	1255	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	188	1170	-	-
	Pste6g02158	1255	Pfam	TrkA-N domain	1013	1126	IPR003148	GO:0006813
	Pste6g02158	1255	MobiDBLite	consensus disorder prediction	110	143	-	-
	Pste6g02158	1255	Pfam	Sodium/hydrogen exchanger family	609	980	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Pste6g02158	1255	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1009	1150	IPR036291	-
	Pste6g02158	1255	Gene3D	-	600	987	IPR038770	-
	Pste6g02158	1255	ProSiteProfiles	RCK N-terminal domain profile.	1012	1134	IPR003148	GO:0006813

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g02158	Pste-Chr6	10220747	10232358	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g02158	91	1169	Inorganic Solute Cotransporters	AT4G00630	70.502	0.0	1373

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g02158	6	10220747	10232358	Pste6g02158	6	10220747	10232358	ECH
	Pste5g01503	5	9597778	9619793	Pste6g02158	6	10220747	10232358	PCT