Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02157 TTTGCCTGTCTGAGGTGTGCATTCTTGTTTAACCCCTCATTGTTCCTCAGACATCCCAGAAGGGAAAAATAAAATAGAAAAACATAAACACAGGCAATAAAGGAAGGGGAAAAAACCAGCATGTCATTCACTGGAACTCTTGACAAATGCACCGCATGTGACAAAACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGCATTCCTTACCATAAAAACTGCTTCAAATGCAGTCACTGCAAGGGATGTCTTACGATGAGCACATACTCCTCAATGGATGGAATTCTCTATTGCAAGCCACATTTTGAACAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTGCAAAGTCTGCTGAGAAACAAAACGACCAAATGAATAGAACCCCAAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGCTTGCGCAAAAACAGTCTATCCTCTGGAAAAGGTGGTACTGGAAGGGGAATGCTTCCACAAGACTTGCTTTAGGTGTGCTCATGGAGGGTGCACTCTCACACATTCAAACTATGCTGCTCTTGATGGTGTCCTCTACTGCAGGGTCCACTTTGCACAACTTTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCCTCTACACCTCCAGTACTGGAGGATCTAACACCAATTGAGCCAGACTCTGAGGATCAACCAGAAGAAGAAGCATCTTGAATGAAACTAGAAATATATGTATTGCTTCAATCCCCCCCTTCCCCCTTCTCCCTTCTTTCAGATTGAGCAAGATCTTTGGTTGAAGTTCAGTCCTCTCAAAACATTAGTCACAAATTATTTTTGAGTACTCTCAAAACATTGAGCAAGATCTTTCGTTGTAAACTACTATTTGAGAGATTTGTTTATTAAGTTATTTATACATTGAGC 948 0.4188 MSFTGTLDKCTACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGCLTMSTYSSMDGILYCKPHFEQLFKESGNFSKNFAKSAEKQNDQMNRTPSKLSSMFSGTLDKCAACAKTVYPLEKVVLEGECFHKTCFRCAHGGCTLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPVLEDLTPIEPDSEDQPEEEAS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02157 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Pste6g02157 206 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Pste6g02157 206 Gene3D Cysteine Rich Protein 101 169 - -
Pste6g02157 206 PANTHER OS06G0237300 PROTEIN 6 83 - -
Pste6g02157 206 SMART lim_4 104 156 IPR001781 -
Pste6g02157 206 SMART lim_4 9 61 IPR001781 -
Pste6g02157 206 FunFam LIM domain and actin-binding 1 4 74 - -
Pste6g02157 206 Pfam LIM domain 105 160 IPR001781 -
Pste6g02157 206 Pfam LIM domain 10 65 IPR001781 -
Pste6g02157 206 MobiDBLite consensus disorder prediction 192 206 - -
Pste6g02157 206 FunFam LIM domain and actin-binding 1 99 169 - -
Pste6g02157 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Pste6g02157 206 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pste6g02157 206 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pste6g02157 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pste6g02157 206 Gene3D Cysteine Rich Protein 5 72 - -
Pste6g02157 206 CDD LIM1_SF3 6 68 - -
Pste6g02157 206 MobiDBLite consensus disorder prediction 178 206 - -
Pste6g02157 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02157 Pste-Chr6 10214838 10216936 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pste6g02157 LIM 1.3e-09 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02157 6 10214838 10216936 Pste6g02157 6 10214838 10216936 ECH
Pste5g01497 5 9576729 9578467 Pste6g02157 6 10214838 10216936 PCT