Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02144 TATTGCACAAAGCCAGCTTGAAATTTCACCAATAGTCCTTGCAAGCCCCTATCATTAAATACGCTCTCCTCAAATACCCATATTCATCATTCACACTTTCTTTTTACTTTAAACCCTTCCCAATTTATGCATACATATTACATACCCATTAATTTCCACCCTTCAAGTTTGTGTTACAAACTAACCTACAAGCAACTCATCATTTGAAGTTGAAGTGTTGTGCGTGGCAAGGATGGGAAGGAAACCGTGTTGTGACAAGATGGGGTTGAAGAAGGGTCCTTGGACTGCTGAAGAGGACGACATTCTTGTAAATTATATCAACAACAATGGTGGCCATGGAAGTTGGCGTTCTCTCCCCAAGTTAGCAGGTCTTCTTCGTTGTGGTAAAAGTTGTCGGCTAAGGTGGACAAACTACCTCAGACCAGATATCAAACGTGGTTCCTTTACACCTGAGGAAGAAAAACTAATCATACAACTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATAAAAAACTTATGGAACACTCACTTGAAGAAACGTCTAATTTGCATGGGCCTTGACCCACAAACCCACCAACCACTGGGCTCTTCACCCGACCCAAATAACAAGGCCCATACATTCACTTCAACCCGCCACATGGCCCAATGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAACCGTATTTGTTTTCTTCCTCTGCCAATAGAACTGATTCCGACCACTTCCTACGCATGTGGAATTCTGAAGTTGGAGAATCATTTCGTGATGTAAACAAATTAGACAACAAAGGTAGCTGCCAAAGCCCCATTTCTGATCTAGGGTCACTGTCTGTCACTACTACAACAGATTTGGCTTCGAATAACCCTGTTGGATCCTCAAGCATTGTGAAAGAAGATTTTGTGTGGGGTGTATCTGATTCATCAAGCTCTAGTGAACTAGAACAAGACTCGTGTGACACTTCTTTGCAGCTCTTGTTAGACTTTCCTATAAACAATGATATGAGCTTCTTAGAATGAGACACACCAACCCTTCAGTGCATGTATTACGTTGATATATGCTGACGTGTAGTTTTTATTTTGTAGCCTTAGTACATGAAATGAGAACATGAACTAGTAGTTAGGTGAGTATAACTGTTATTCAGCATTAATGATATTGCAGAAACTGGACTATTAGCTACATTATTGGGCAGATTTTATTGATACTAAGTATTCAAAAGTATGTTTGATGAGTGTATCAATACAGATTTCGCCAACATGTTATTGGTGTCGAATTGGTATATGTTCATCTCTCTCTCCATTTGTTCCTGTTCAGACTGAGTGCTATTTAAAAGTTGAATGTAATACTCGTAGTAACCTTAG 1411 0.4075 MGRKPCCDKMGLKKGPWTAEEDDILVNYINNNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTPEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLGSSPDPNNKAHTFTSTRHMAQWESARLEAEARLSREPYLFSSSANRTDSDHFLRMWNSEVGESFRDVNKLDNKGSCQSPISDLGSLSVTTTTDLASNNPVGSSSIVKEDFVWGVSDSSSSSELEQDSCDTSLQLLLDFPINNDMSFLE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02144 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pste6g02144 278 SMART sant 13 64 IPR001005 -
Pste6g02144 278 SMART sant 67 115 IPR001005 -
Pste6g02144 278 FunFam Myb transcription factor 11 68 - -
Pste6g02144 278 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pste6g02144 278 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Pste6g02144 278 FunFam MYB transcription factor 70 117 - -
Pste6g02144 278 Gene3D - 70 117 - -
Pste6g02144 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pste6g02144 278 CDD SANT 16 62 IPR001005 -
Pste6g02144 278 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pste6g02144 278 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pste6g02144 278 Gene3D - 11 68 - -
Pste6g02144 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Pste6g02144 278 CDD SANT 70 113 IPR001005 -
Pste6g02144 278 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02144 Pste-Chr6 10149513 10153254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02144 1 278 MYB Transcription Factor Family AT3G61250 64.085 1.04e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g02144 Myb_DNA-binding 1.4e-12 CL0123