Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02140 TTGTTGGCTAGTTCGTACGCCCTAGAAAAGAAGAGGGAACTAACACCAAGATTAGAGGTTTCTTTCTTTCTGCATTCTTTTCTGTGTTGTTCACTTGTTCTCAACCTTAACCCTTCCAAACCAACACCTATAAAACCAACCTTTCTCTTCTTCTTCTTCTCCCTTCGCCCGGGTTGAACTCTAAGAAGAACCTCACAAAACCCTCACTCTCTTTCTCTCTCTCTAGATCTGTTCAATCCCCTAACCATTTCCGCTCCAATTTCCATTTCCCTCAACGAAACCAAACCCTAACTCCTCTCTCTGTATCATATCAGATTTTCCCCTCACAGGCCTACTTACCCTGTTGATTTGTACATTCTCTCAGTAGTTTAGGTTAGATTTTTCTAGTTTTAAGGGTTTTTCAATCGGTGAGATGAACCACCACAGCAACAACAATAGAGCCAGGTACCCTCCCGGGATGGGCCTTGGCCGCGGAGGTTTCAATCCCAACCTCAACCAGAACCCGAACCTGAATCACCATCCCAACCTCAACCAGAATCACGGGTTTCAGGCTCGGCCACCGTACCAGCAACAGCCGCAGTATGTGCAGAGACATTTGGTGCAGCATCAGCAGCAGCCTCCACCGCAGCAGCAGCAGTGGCTGAGAAGAGACGCCAACGCCGCCATCGACGAGGTCGAGAAGACCGTACAGTCTGAAGCTGTGGATTCCAGTTCACAGGATTGGAAAGCAAGACTGAAGATTCCACCAGCTGATACACGCTATAAGACAGAGGATGTAACGGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACCGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAACTGGCTTTGCAAACTTCTCAAGTGTGTAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTATTGGTTGGAACTCCTGGAAGAATATTAGATCTTGCGAAGAAAGGTGTTTGTATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAACTTCTGTCCCCTGAGTTCCAACCTTCTATAGAGCAGTTGATTCATTTTCTTCCTACAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAAGTATCTTCAAAAACCTTATGTCATCAACCTCATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTTGAAGAGAGACAGAAAGTTCACTGCCTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAATCGAGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTACATTCATGCAAAAATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGTAATGGTGCATGTCGAAACCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTCCCCAAGAACTCCGAGACTTATTTACACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATTACTTATGAGGATCGGTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCCCCGCAAATTGATCAGGCAATTTATTGCCGGTGATTGACTGTAAATACCAGGGTTGTGTTTACAATTATGGCTAATAGCAGTGGTTAGCGTGACTGTGGCAGTGTGGCTCTAGCAGGTGCATGGGAGGATTTGCAAAACTAGTGACGAGTTGTGTATTATTGGAACCCTGTCGTGAGAGGATGCACCGTCAAAAACTGGGTGTTATTGGAACCCATTATTGAGTGCTTTTCGATTAATTCTGGTTTTGAGAGCCCTGAAACATTATTGGGATATTTTAAAGTTTAGTACTGGCTTTTAATTTCCAGATAGTTACTGGGTCCAGTTTGGGTTTCCGTTGATTACATTTGCAGATTTATTTTGTCTTTAAATGTTATTAGTTGTAGTTTTATAATTGAATGGTTTAGGGATAATATACCTTGTTTTGAATTTGTCTTTTCCCTATGTTATTTTCGTATCGGTCTGCTGCCATTATGGGTTCTCTTATAGATTGTAGATTCATAGGTTTAGAAGCCTCAACATTTGCTGGTTATGTTATGCCATATGATTCATGGCGGTGCTTGTTTATCCACAATTGCTTGTCGCCAGGATTTTCATGGCCATTGCTGTTGAAGCCTTGAAGGTCTTGCCAAGTTTGTGGAGCCACTTTTGATATTATTTTCTTCTTAGGAGTGCAGGGGATTCTCTGGGATCCTCACTATTTATTAATTTCATGAGCATATGTTGGCACTTGGTATTTAAATGCTAACTGCTTGGTAGCTTCTGATGATATACTTATACCCATGGCATTGCTAGAAATTGTCAACTGCTAGGTTATTGCTATAGTTCTTTTTATACTTAAAAC 2729 0.4086 MNHHSNNNRARYPPGMGLGRGGFNPNLNQNPNLNHHPNLNQNHGFQARPPYQQQPQYVQRHLVQHQQQPPPQQQQWLRRDANAAIDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPTNRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02140 502 Pfam Helicase conserved C-terminal domain 354 460 IPR001650 -
Pste6g02140 502 MobiDBLite consensus disorder prediction 1 49 - -
Pste6g02140 502 SMART ultradead3 147 343 IPR014001 -
Pste6g02140 502 FunFam ATP-dependent RNA helicase DDX6 109 332 - -
Pste6g02140 502 Pfam DEAD/DEAH box helicase 153 317 IPR011545 GO:0003676|GO:0005524
Pste6g02140 502 SMART helicmild6 379 460 IPR001650 -
Pste6g02140 502 FunFam ATP-dependent RNA helicase DDX6 333 502 - -
Pste6g02140 502 CDD SF2_C_DEAD 340 469 - -
Pste6g02140 502 Gene3D - 333 502 IPR027417 -
Pste6g02140 502 MobiDBLite consensus disorder prediction 23 49 - -
Pste6g02140 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Pste6g02140 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 275 283 IPR000629 -
Pste6g02140 502 Gene3D - 81 332 IPR027417 -
Pste6g02140 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 329 IPR014001 -
Pste6g02140 502 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 73 501 - -
Pste6g02140 502 CDD DEADc_DDX6 130 330 - -
Pste6g02140 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 499 IPR001650 -
Pste6g02140 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 482 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02140 Pste-Chr6 10129702 10137386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02140 128 499 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 3.51e-94 290