Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02125 TTAATGTTCTTGTTCACTTGCACTCACTCACTTCTCACTTTCACACACACCACTCTCTCTCTCCTGTGCTCTTCTGTCACCCACCGCTCTTTAATTCCCATGAAACCGTTGAACGGACCTCCAATTCTCCACTACCACCACACACTCTTTTCAGAATTTTTTCATTCTCTCTCCTCACATGTTAGTACTTTTCCTCTTCTCTCCATGATTTCAACTCAAATTCATTTTGCATTCTTAGCATTATCACTTTCTTTGTATTTCGGGCTGTCAAATGAATCTGTTCTAGTTTTACCAAGGTTGTCACTTTCTCTCTGGGTGTTTCACGTTCCTGACATTTTATACTCTTTACTTCAATTTCAAACTGGGTTTAAAATATTTTATGATGTTAACTTGAAAAGTAAATGCATGGATCGAGGGGACCAAATGACATTACCGGGGTCTGCACCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAACTCAACCTGAACTGCACAATTCACCTAATATTAGACCATTGTCTAATCCCAATCTACCATTTCAATCAAGTATTGGGGGTGGTGGTACTATTACAGTGCCATTAGAGTCTTCAGGAATTTCATCCCCATGTGTCAATGTGAGTGCTCCTTCTGGGGCTGTGACTGGGGAAACTGTCAAGAGGAAGAGAGGAAGGCCTAGAAAATATGGCCCTGATGGAGCTGTGTCCTTGGCGTTGACTCCGGCGCCGGCTAGTCATCCTGGAGCCTTGCCTGGCCAGAAACGAGGTAGAGGCCGCCCCCCCGGCTCAGGGAAGAAACAGCAGTTGGCCTCTCTTGGACATTGCAACAAAAATCATGGCATTTTCTCAGCAAGGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTATTTGGTTGTTGATAGTGGTGGTTCCCGTAATCGAACTGGTGGATTGAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTGATAGGTGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTTCAGTTCAGGTTATAGTTGGGAGCTTTACATGGGGTGGATCAAAGACAAAGACGAAGAAAAAAGAAGGTTCAGAAAGTGCAGAAGTTGCAATAGAGACTGATCATCAGACAGTTCATAATCCGGTTGCAGTGAATAGCATTTCCCCAAACCAAAATCTTACTCCAACCTCAGGTCTAAGTCCTTGGCCTGCATCGCGACCATTGGATATGCGCAATTCCCATATTGACATTGATTTAATGCGCGGGTGACAATTTCTGTAGCATGAGTATATAATTCAAATTCATGGTCACTCATCTAATTTTCTTGTAGTAGTAACTACAATATTCGAAGTATCAACGACAGAGTAGAAGCCAGCTGACTCTTGGAAATTTGATGAAATGCCATCTATCTTCCCATGATCCACTGTGGGGTTGTACTCATATTTTTGTAGTTGTGGAGATTTATAATTTCAAGATTTCGTGTTCTTGTTCTTGTTCTTCGTTAAATACAAATCCTATTTTATATCTTATTTGAAAGAGATTGACATTGGCATAGATGTTCTGTGGCTTAGGGATATAGATTATGATACAATCTAGTGTGATTTTTGTCATTAAATTGTTGTCTCCAGAAATGCAATGACAAAAGAGTACTGCATTAAGATTTTCTTGATTATATATAGTTGGAAGTGTTGTGTTTGTG 1687 0.4155 LMFLFTCTHSLLTFTHTTLSLLCSSVTHRSLIPMKPLNGPPILHYHHTLFSEFFHSLSSHVSTFPLLSMISTQIHFAFLALSLSLYFGLSNESVLVLPRLSLSLWVFHVPDILYSLLQFQTGFKIFYDVNLKSKCMDRGDQMTLPGSAPYYMQRGIPGAGTQPELHNSPNIRPLSNPNLPFQSSIGGGGTITVPLESSGISSPCVNVSAPSGAVTGETVKRKRGRPRKYGPDGAVSLALTPAPASHPGALPGQKRGRGRPPGSGKKQQLASLGHCNKNHGIFSARGRFEILCLSGSYLVVDSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASSVQVIVGSFTWGGSKTKTKKKEGSESAEVAIETDHQTVHNPVAVNSISPNQNLTPTSGLSPWPASRPLDMRNSHIDIDLMRG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02125 418 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 197 271 IPR039605 GO:0003680
Pste6g02125 418 SUPERFAMILY AF0104/ALDC/Ptd012-like 274 349 - -
Pste6g02125 418 SMART AT_hook_2 254 266 IPR017956 GO:0003677
Pste6g02125 418 SMART AT_hook_2 220 232 IPR017956 GO:0003677
Pste6g02125 418 MobiDBLite consensus disorder prediction 215 269 - -
Pste6g02125 418 Pfam Plants and Prokaryotes Conserved (PCC) domain 274 346 IPR005175 -
Pste6g02125 418 MobiDBLite consensus disorder prediction 159 179 - -
Pste6g02125 418 Gene3D - 262 375 - -
Pste6g02125 418 MobiDBLite consensus disorder prediction 163 179 - -
Pste6g02125 418 ProSiteProfiles PPC domain profile profile. 219 366 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02125 Pste-Chr6 10040467 10047150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02125 136 418 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 35.770 9.03e-38 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02125 6 10040467 10047150 Pste6g02125 6 10040467 10047150 ECH
Pste5g01468 5 9405587 9412419 Pste6g02125 6 10040467 10047150 PCT