Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02098 atgcctgtaaatccatggaccctcttcttcatatgcatttcccttctacttccattccactccttcatagctgccgcagtgaaccagcaaggagaagctcttctttcatggaagagaaccctgaacgggtccgtggatgtattgagtaactgggacccaattcaagacactccatgtagctggtatggagtgagttgcaactccaagaaccaagtggtacaattggatctgaggtatgtggatttgcttggaagacttccctccaatttcacctcattgctttccttaaccagtctgatcttaactggaaccaaccttacgggctcaatcccaaaagaaataggctatcttgtggaacttagctacttggacttgagtgacaatggcttgagtggtgaaatcccaagtgagctatgttacttgcccaaacttgaggaacttcatctcaactccaacgacctcgtggggtccattccagtagcaattgggaatctcacaaagttggagaagttgatcctctacgacaatcaactcagcggcgaagttcccaccactatgggcaaccttaagagccttcaagtgattagagcaggaggaaacaagaacctggaaggtcctctaccaaaagaaattggcaactgttccagtttagtgatgttgggtcttgcggaaacaagcctatcaggttgtctgccaccaactctaggccttttgaagaacctggaaaccattgccatttacacttccttactctcgggtgaaatacctccagagcttggagactgcacagggctacaaaacatttatctttacgagaactccctcactggatccataccaagcaagttgggaaaccttaagaagctggaaagccttctgctgtggcagaacaacttagttggcgtcatccctccagagataggaaactgcgagcagttgtcagtgattgacgtgtcaatgaactcactaaccggaagcattcccaaaagcttcgggaacttgacgtcactccaagagctccaactgagtgtgaaccagatatcaggggagattcctggagaactgggggcgtgtcagcaactcacgcacgtagagctagacaataatcaaatcacgggcaccataccttcccaattgggaaaccttgcgaatctaacgctattgttcctgtggcacaacaagctgcaaggtaacattccctcttccctttccaattgtcaaaatctggaggctatcgatctgtcgcagaatggattaacgggtcccatacccaaggggatattccagctcaagaatctcaacaagcttttgctcctatccaacaatctctcgggaaaaatcccctcgcacattgggaattgttcctccctaattcgatttcgggccaatgacaacaacatcaccggctacattcccccgcagattggaagtctccataacttgaatttcctagacctcgggaacaatcgcatttctggacttatcccggaggagatctccggctgccgaaatctcgcttttctcgatatacattcaaacttcatcgccggagacctaccggaaagtctgagccggcttaattcgcttcagtttttcgatgtctccgataacatgatcgaaggtacactaaaccctaccctcggcgaactctccgcgctttccaagctcgttctcgcgaagaatcgaatctccggctcaattccgagccaactcggttcttgttcaaagctacaattactggatctcagtagcaacaatctctccggcgaaatccccggcagcatcggcaacattccggcgctggaaatcgctctgaatcttagcctaaaccaactcaccggcgagatccctcaggagttttccggattgacaaagctcggagtgctggacatatctcacaacgtcctcagcggaaacctccaatatctcgccggcttgcaaaatctggtggtcctgaacatctcgtacaacaaattctcggggcgcgttccggacacgcctttcttcgcgaagcttccgctgagtgtgctggcgggaaacccggggctgtgcttcgcgggaaacgagtgcggcggagacggcaacaagaggtcagggaggcgagctatggtggcgcgcgtggcgatggtggttttgctgtgcaccgcgtgcgtgttactcatggcggcgctgtacgtcgtggttgcagcgaaacgacgaggggaccgcgaaaacgacgtggagctggatggaaaggacagcgacgcggacatggccccaccttgggaagtgacattgtaccagaaactcgatctgtctatctctgacgtagcgaaatgtctttctgctagtaacgtcatcggccacggccgatccggcatcgtttacagggtcgacttgcctgccacgggactacccatcgcagtcaagaagtttcgcttgtcggagaaattctccgcggcggcgttctcctctgagattgccacgctggccagaatccgtcaccggaacatcgtgcggctgctgggttggggtgccaataggaggaccaagttactgttttacgattatttacccaacggtaacctggacacgctgttacacgatgggtgcacaggatcgattgattgggagacgcggctcaagatagctctaggcgtggctgagggtgtcgcttacttgcaccacgattgcgtgcctgctatcttgcaccgtgacgttaaatcgcagaacattttgttgggagacagatacgaaccttgtttggcagattttgggttcgctcgcttcgtcgaagaggatcacgcttccttttccgttaatccacagttcgcgggttcatacggctacattgctcctgagtatgcttgcatgcttaaaatcacagagaagagcgatgtgtacagctttggagtggtcctactggagataataacgggaaaaaggccagtggatccatcattcccggatggacaacatgtgattcagtgggtgagggagcaccttaagagcaagaaggaccccatagagattctggattccaagctacaaggccatccagacacacaaatacaagagatgctacaagcccttggtatcgctctcttgtgcacaagtaatcgtgcagaggatcgaccgacaatgaaagacgttgcagcattattgagagaaattcgtcacgatcctccaccaggtgctgagccccccaagcccaaacacaaaacaacggaagcttcgtcctattcctcctcctcagtcacccctgctcagttgttgctcctgcaatctagttcacattcctcatcacttgcttattcctcttcctcagcagcagcctacccccctccaaggaatcaaccctaa 3342 0.0 MPVNPWTLFFICISLLLPFHSFIAAAVNQQGEALLSWKRTLNGSVDVLSNWDPIQDTPCSWYGVSCNSKNQVVQLDLRYVDLLGRLPSNFTSLLSLTSLILTGTNLTGSIPKEIGYLVELSYLDLSDNGLSGEIPSELCYLPKLEELHLNSNDLVGSIPVAIGNLTKLEKLILYDNQLSGEVPTTMGNLKSLQVIRAGGNKNLEGPLPKEIGNCSSLVMLGLAETSLSGCLPPTLGLLKNLETIAIYTSLLSGEIPPELGDCTGLQNIYLYENSLTGSIPSKLGNLKKLESLLLWQNNLVGVIPPEIGNCEQLSVIDVSMNSLTGSIPKSFGNLTSLQELQLSVNQISGEIPGELGACQQLTHVELDNNQITGTIPSQLGNLANLTLLFLWHNKLQGNIPSSLSNCQNLEAIDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSHIGNCSSLIRFRANDNNITGYIPPQIGSLHNLNFLDLGNNRISGLIPEEISGCRNLAFLDIHSNFIAGDLPESLSRLNSLQFFDVSDNMIEGTLNPTLGELSALSKLVLAKNRISGSIPSQLGSCSKLQLLDLSSNNLSGEIPGSIGNIPALEIALNLSLNQLTGEIPQEFSGLTKLGVLDISHNVLSGNLQYLAGLQNLVVLNISYNKFSGRVPDTPFFAKLPLSVLAGNPGLCFAGNECGGDGNKRSGRRAMVARVAMVVLLCTACVLLMAALYVVVAAKRRGDRENDVELDGKDSDADMAPPWEVTLYQKLDLSISDVAKCLSASNVIGHGRSGIVYRVDLPATGLPIAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHDGCTGSIDWETRLKIALGVAEGVAYLHHDCVPAILHRDVKSQNILLGDRYEPCLADFGFARFVEEDHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVREHLKSKKDPIEILDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPPGAEPPKPKHKTTEASSYSSSSVTPAQLLLLQSSSHSSSLAYSSSSAAAYPPPRNQP 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02098 1113 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Pste6g02098 1113 Gene3D Phosphorylase Kinase; domain 1 754 850 - -
Pste6g02098 1113 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Pste6g02098 1113 Gene3D Ribonuclease Inhibitor 604 690 IPR032675 -
Pste6g02098 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1065 - -
Pste6g02098 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 516 591 - -
Pste6g02098 1113 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Pste6g02098 1113 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Pste6g02098 1113 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Pste6g02098 1113 Gene3D Transferase(Phosphotransferase) domain 1 851 1057 - -
Pste6g02098 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Pste6g02098 1113 Gene3D Ribonuclease Inhibitor 282 362 IPR032675 -
Pste6g02098 1113 Gene3D Ribonuclease Inhibitor 363 603 IPR032675 -
Pste6g02098 1113 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Pste6g02098 1113 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 368 1043 - -
Pste6g02098 1113 SUPERFAMILY RNI-like 268 640 - -
Pste6g02098 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Pste6g02098 1113 ProSiteProfiles Protein kinase domain profile. 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02098 1113 SUPERFAMILY L domain-like 55 305 - -
Pste6g02098 1113 MobiDBLite consensus disorder prediction 1052 1067 - -
Pste6g02098 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Pste6g02098 1113 SMART serkin_6 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02098 1113 MobiDBLite consensus disorder prediction 1052 1079 - -
Pste6g02098 1113 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02098 1113 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Pste6g02098 1113 Pfam Leucine rich repeat 360 419 IPR001611 GO:0005515
Pste6g02098 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 515 - -
Pste6g02098 1113 SMART LRR_typ_2 550 574 IPR003591 -
Pste6g02098 1113 SMART LRR_typ_2 165 189 IPR003591 -
Pste6g02098 1113 SMART LRR_typ_2 334 358 IPR003591 -
Pste6g02098 1113 SMART LRR_typ_2 382 406 IPR003591 -
Pste6g02098 1113 SMART LRR_typ_2 478 501 IPR003591 -
Pste6g02098 1113 SMART LRR_typ_2 286 310 IPR003591 -
Pste6g02098 1113 SMART LRR_typ_2 117 141 IPR003591 -
Pste6g02098 1113 SMART LRR_sd22_2 526 552 - -
Pste6g02098 1113 SMART LRR_sd22_2 117 149 - -
Pste6g02098 1113 SMART LRR_sd22_2 623 648 - -
Pste6g02098 1113 SMART LRR_sd22_2 262 288 - -
Pste6g02098 1113 SMART LRR_sd22_2 574 600 - -
Pste6g02098 1113 SMART LRR_sd22_2 478 501 - -
Pste6g02098 1113 SMART LRR_sd22_2 165 191 - -
Pste6g02098 1113 SMART LRR_sd22_2 382 411 - -
Pste6g02098 1113 SUPERFAMILY Protein kinase-like (PK-like) 764 1050 IPR011009 -
Pste6g02098 1113 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02098 Pste-Chr6 9893458 9897811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02098 26 1103 Receptor kinase-like Gene Family AT5G56040 55.014 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste6g02098 Pkinase 3.7e-40 CL0016