Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02078 TGAAAGTCCAAGTAGTGGGGCGAAACGCTTTCTCGGAAACTTCGCATGAAGCAGGCAATATAGGGAACATGATGGAGGGAGAAGAAGAAAAAGAAGGAGAATGAGCCAAAAGTGGTAGGAACATGGGGTTGTTCTTGTAATTTCCAGGTACATCTGTGTTACTATTTATCATTACTTTGGTGTCTCTTCTGTTTGTACACTACCATGCTACGAGCTCAGGACAGCACCACCCTTTTCCATTCCTATATGAGACAACATAGATAAGCACCTGCATATTAAAAAAATAATCCCGTTTCCATTTCATTTCATCACTTTGTGGGTAATGAGTTTCCATCATCCTATGAACTTTTTTTTTTTAATGATGATAGACAATGGACATGTTGCATATTTGAGTATCCTAGATTGTGTTTGAGCTATTTCTAGGTAGAGAAAAGCTGAATTTTTATTCTTTCTTCTTTAATATTTGGGTTGAGTGGGAATTCCATGTCAGCTGGGAGAGAATTTGCTTATGAATTCTCTTAGCTGAGACAAATGGAAAGAGCTTTGGAGGGAACAAAGATGTTTTTTTGTTAGTTCTAGAAAGATTTTTTGGTTAGTTTGAGAGTCTTTTTTATTGATTTATTCATTTTTAATTGCCTTTTGAGTTATTGGGTTTAACAAGTTTTGATGATTATGATGCTGAGTAGATTGAGATAGGGTTGTGTAAGAGAGAGAATTCGTAGTATTTGAGTTCTTCTATATTTCATTGGCTAGGAAGTTGATGAGTTGAGCACTTTTGAGTTTCGGTTTAACGCGATTCTCTTCAAAAGTGGAAGAAAGAGTCTTCTAACTGTTCAGCCATTCTATTAGTATGGCTGTGGTGAGTCCTATACCTGCGACTCCACATAGGATCAATTCCTTGAACTCACTTCGTGAAATTGGGGTTCCTGGAATGATGACCACTAGGAGAGAAGTTGCAAATGAACCTGATCCAAGTATGGTTGATGACACAATCTATGTTGCTGTGGCAAAAGATGTGAAAGATAGCAAACTAAATCTAATATGGGCAATACAAAACTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCCTCTACGATCCCCTTGATGGGTGCTAAATTTCCGGCAAGTGCACTGAACGAGCAAGAAGTTCAAGCTCACCACGAAAAAGAGAGGCTAAAAATGCACAACACTCTGGATGCTTATCTTTTTATCTGTCAAAGGATGGGGGTGCGGGCAGGGAAACTACACATTGATATGGACTGCATAGAAAAAGGAATTGTAGAACTAATTTCCCACTATGGCATACAGAAGCTTGTAATGGGCGCAGCATCTGATAAGTACCATTCAAGGAGAATGACAGCCCTCAGATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCTGCTTCTTGTCATTTACAGTTTATCTGCAACGGGTACCTCATACAGACAAGGGATTGCAGTTTGGATAGAGGGAATGTAGAGGTTGCATCTCCTTTGGTACAGCAAATGTCAAACTCTGAAGTTGGGAATTCCCCTAACTTGAGATCCCAACCTGTTGTGCAAGGACAAAATCATTGGGTAAAACTAACTAATCCAACACAAGAGTTGCTCCGTAGAGTAAGGATTATCATTTATGGACATAGGAGGAGCCTTGAATATGTTTCTTCTTCAGAAACATTTTTAACTCCACAGAGCGAGTTTGGTACAGAAGTAAGTTGTGATGAGTTAGACAGGCTGTCACGGCAGAGTCCTTCAGTTTTCTCAATGTGCTCTGACAGTAGTTCAGTTGGAGCAGGATTGACCCCAAACTTGATTAATGAATCCAGTGAGAATGTATTAGAGTTAACTTTGAATAGCCTTTCTCTGATTAATGAGGATCTTCATCATTCACCATCTCCTGGTGTACTGGATGGAGGAATGGATGATGCACATGCACTCTATGATCAACTTGAACAGGCTATGGCTGAGGCTGCGAATGCTAGGCAGGACGCATACCAAGAAGCTGTTAGGCGTGGGAAAGCTGAAAAAGCTGCCATTGATGCTATACGCAAGGCTAAAGCCACTGAGAACTTGTATAAAGAGGAGCTTAAACTAAAGAAAGAACAAGAGGAAGCAATACGGAAAGCAAATGAAGAACTCAATAATATGAAGAGCCAGACAGAAAAAGTTAATGAGCAACTCCAACTTGCCTTGGATCAGAAATTATCTCTAGAGAATCAAATTGCATCAACTGAACTTATGATAAAGGAGTTGGAGCAGAAGGTTATAACTGATAAAAAACTGATACAAAACTACAAGGATGAATTAGATGATTTGCAAATGCAGTGTGATAATGCACTGGGAGAGGCTGAGGAGTTAAGGAGAAAACAAGGGGAGGCCTCATCAAGCGCACACAAGCATCAACACTTCTCAGAATTCTCCTTTTTAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCCTGAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCTTGCGTCACACTAAGGTGGCCATAAAAATGTTGAATCCTGGCAGCACACAAGGACCAGTGGAGTTTCAGCAGGAGGTTGAAGTATTAGGCAAGTTAAGGCACCCCTATCTTATCACACTAATAGGAGCCTGCCCAGAATCTTGGACTCTTGTTTATGAGTTTTTACCCAATGGAAGCCTTGAAGATCGACTCAACTGTAAGGATAACACACCTCCATTATCATGGCAAAGTCGAGTTCGCATTGCTGCAGAACTCTGTTCTGCTCTAATTTTTCTTCATTCTAGAAAACCTCACAGCATAGCGCATGGTGACTTAAAACCCGCCAATATTCTCCTTGATGCAAACCTTGTTAGCAAACTCAGTGACTTTGGAATCTGCCGTATATTATCTCATCAAGAGAGTTCTAGTAACAGTACTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTATATATGGATCCTGAATTCTTTGCTTCTGGTGAACTTACACCAAAGTCTGATGTTTATTCATTTGGAATCATTCTATTGAGATTGATTACTGGGAAACCAGCCCTGAGAATAATAAAGGAAGTGCAATATGCATTAGATGTTAGAAAGTTGAAATCCATCTTGGATCCTTTGGCTGGAGAGTGGCCACTTAGGCTAGCTGAAGAGTTGGCTCACTTGGCTTTGAGGTGTTGTGAGATGAATAGAAAGAACCGGCCAGACCTTTTTCCAGATGTATGGAGAGTACTTGAACCAATGAGGGCTTCTTCTGGAGACAATAACACCGTTCAACTGGGTTCCCAAGAGCTATGCCAACCTCCTCCTTATTTTATTTGTCCAATCTCCATGGAGGTTATGCAAGATCCACATGTGGCTGCAGATGGTTTTACTTATGAAGCCGAGGCTATACGTACATGGCTTGAAAGTGGCCATGACACTTCACCAAGGACAAATTCTAAGCTTGCACATCGCAATCTTGTTCCCAATCATGCACTTCGGCATGCAATTCAGGACTGGCTTCAAAGTCTC 3544 0.4055 MAVVSPIPATPHRINSLNSLREIGVPGMMTTRREVANEPDPSMVDDTIYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPASTIPLMGAKFPASALNEQEVQAHHEKERLKMHNTLDAYLFICQRMGVRAGKLHIDMDCIEKGIVELISHYGIQKLVMGAASDKYHSRRMTALRSKKAIYVCEQAPASCHLQFICNGYLIQTRDCSLDRGNVEVASPLVQQMSNSEVGNSPNLRSQPVVQGQNHWVKLTNPTQELLRRVRIIIYGHRRSLEYVSSSETFLTPQSEFGTEVSCDELDRLSRQSPSVFSMCSDSSSVGAGLTPNLINESSENVLELTLNSLSLINEDLHHSPSPGVLDGGMDDAHALYDQLEQAMAEAANARQDAYQEAVRRGKAEKAAIDAIRKAKATENLYKEELKLKKEQEEAIRKANEELNNMKSQTEKVNEQLQLALDQKLSLENQIASTELMIKELEQKVITDKKLIQNYKDELDDLQMQCDNALGEAEELRRKQGEASSSAHKHQHFSEFSFLEIKEATSNFNPSLKIGEGGYGSIFKGILRHTKVAIKMLNPGSTQGPVEFQQEVEVLGKLRHPYLITLIGACPESWTLVYEFLPNGSLEDRLNCKDNTPPLSWQSRVRIAAELCSALIFLHSRKPHSIAHGDLKPANILLDANLVSKLSDFGICRILSHQESSSNSTTQFWRTVPKGTFVYMDPEFFASGELTPKSDVYSFGIILLRLITGKPALRIIKEVQYALDVRKLKSILDPLAGEWPLRLAEELAHLALRCCEMNRKNRPDLFPDVWRVLEPMRASSGDNNTVQLGSQELCQPPPYFICPISMEVMQDPHVAADGFTYEAEAIRTWLESGHDTSPRTNSKLAHRNLVPNHALRHAIQDWLQSL 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02078 898 ProSitePatterns Protein kinases ATP-binding region signature. 546 567 IPR017441 GO:0005524
Pste6g02078 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Pste6g02078 898 Gene3D Transferase(Phosphotransferase) domain 1 613 812 - -
Pste6g02078 898 SMART Ubox_2 831 894 IPR003613 GO:0004842|GO:0016567
Pste6g02078 898 FunFam receptor-like protein kinase FERONIA 504 612 - -
Pste6g02078 898 Coils Coil 362 389 - -
Pste6g02078 898 Pfam Protein kinase domain 544 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02078 898 Coils Coil 404 511 - -
Pste6g02078 898 ProSiteProfiles U-box domain profile. 827 898 IPR003613 GO:0004842|GO:0016567
Pste6g02078 898 CDD RING-Ubox_WDSUB1-like 829 884 - -
Pste6g02078 898 Gene3D Phosphorylase Kinase; domain 1 517 612 - -
Pste6g02078 898 SUPERFAMILY Protein kinase-like (PK-like) 516 805 IPR011009 -
Pste6g02078 898 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 827 898 IPR013083 -
Pste6g02078 898 PANTHER OS02G0152300 PROTEIN 48 893 - -
Pste6g02078 898 CDD STK_N 47 200 - -
Pste6g02078 898 SMART serkin_6 540 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02078 898 ProSiteProfiles Protein kinase domain profile. 540 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02078 898 SUPERFAMILY RING/U-box 823 896 - -
Pste6g02078 898 Pfam U-box domain 829 896 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02078 Pste-Chr6 9784318 9790893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02078 1 896 U-box Gene Family AT2G45910 52.009 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pste6g02078 Pkinase 2.5e-42 CL0016