Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02056 ATGCAATTCCATAACACAATGTCCCTAATCCTCATTCTTTCCTTGCTTCTGATTTTCCCCTCCAGAGGCAGCGTTATTCTGCAAGGCAACAGCAGAGTGAAAAGCCCGAACAACACCTTCGAATTGGGCCTGTTCAAGTTCTCACCGGGCCCAGCGAAGTTCTACCTGGGCATCCGCTACACAGCCCTCCCCAACCCGAACACCATATGGGTGGCCAACCGCCTTAGCCCCGCCCCCTCACTAAGCGCTTCTACTCTCCAGCTAACGGAAACCGGTCAATTGATCCTAAGCCACTCCAACACGACTCTCTGGTCCACCCAAAAGCAAAAGGAGAAGCTGAAGATGAAGATGAAGCTGCTGGAGTCCGGTAACCTAGTCCTGGTGAGCTCGGAGGGCGTGGTTGCATGGCAGAGCTTCGATTACCCGGCGGACTGCTGGGTCCCCGGGATGAACCTGACGCGGTTGAACTCCCTGACCTCGTGGCGCACTGAAAGCGACCCTTCACCGGGCCTTTACTCCCTCCGCTTAAAGCCACCCTTGTACGCCCAGTTCGAGCTCCTTTTCAACCACACTTTTTCTTACTGGTCCACCGGCAACTGGACCAACGGCTCCTTCCTCAACGTCCCCGAAATGTCCATCCCCTACCTCTACTCCTTCCACTTCCTCTCCCCCTTCTCCCCCGCCGCCTCCTTCGGTTTCTCCGAACGCACCTCCGACACCGGCCTCCTCCTCCCCACCATGTTCCGCCTCCATCCCTTCGGCCAAATCAAGCAGTACACCTGGAACTCCCAGTCCCGTTCCTGGAACTTCTTCTGGGCCAAGCCTGAACCTCTCTCCCAGGTTCCCGGACTCTGCGGTTCCTTCGGCCTCTTCACCTCTCAATCCTCCACTTTCTGCCAGTGCCTCACTGGGTTTCAGCCTTTCGATGCTCATTCCTGGTCTGAGGGTGATTATTCCCGTGGCTGCTTCCGTCGGGATTCCGCCTGTTATGGGACTGATGCCTTTCAACGTCTCGCTGATGTCATCTTTTCCTTTGGGAATGTCACTGTCCTCAGCGGCAATTCTAGACGCTTTTGCCAGCGTCACTGTTTGGCTTCTTGTGCTTGCGTTGCCTTCACTTTTCACCAACAGCCTCGCTTCTGTAATCTTTTTTATGGGTTTCTCTCTGATTTTCAGAATTCAACTGGCCTTGGTGAAAGTGGGGTTTTGTATGTTAGGGTTCCCAGAGGGAGGAAGTGTTTTGATAGGAAGGTGTTGGGTGCTGTTGTGATTGGGGTTGTTGCCCTTTTAGGGGTTGTTGTGGTCATTTTGTTGGTTATCGTCAAGAGGAGGGGTGGGAAGAAGGGCTTGGAGGAGGATGGGTTTCTTCTGCCTGTGTTGAATTTGAAGGTGTTTTCTTACAAGGAGCTTCAGTTGGCGACTCGAGGGTTTTCGGACAAGGTCGGCCATGGAGGGTTTGGGACTGTGTTTCAAGGGGAGTTGTTTGATGCTTCCATTGTGGCTGTGAAGAGGTTGGAGAGGCCAGGGGGTGGGGAGAAGGAGTTCAGAGCCGAGGTCTCCACGATTGGGAATATTCAGCATGTCAATCTTGTGAGGCTCAGAGGGTTTTGCTCTGAGAATTCTCACAGGCTTTTGGTTTATGAGTACATGCAGAATGGTGCTCTTAGTGTTTATTTGAGGAAGGAGGGGCCTACTCTGAATTGGGATGTTAGGTTCAGGGTCGCTGTTGGGACTGCTAAGGGCATTGCTTATTTACACGAGGAATGTAGGTGTTGCATCATACATTGTGATATCAAGCCTGAGAATATTCTTTTGGATGCCGATTTCACTGCCAAGGTTTCAGATTTTGGGTTGGCCAAGCTCATTGGGAGGGACTTTAGCAGGGTGTTGGCCACCATGAGGGGGACCTGGGGGTATGTTGCGCCGGAGTGGATTTCCGGTGTGGCAATTACCACCAAGGCTGATGTTTACAGCTACGGAATGACATTGCTGGAGCTTATTGGCGGTCGGAGGAACGTGGAGGCACCACCCTCAGCTGGTGGAGGGGGAGACAGTGGTGGTGAGACAAGAGGGAAGTGGTTCTTCCCGCCCTGGGCGGCGCAGCGGATAATAGAGGGGAATGTGAGTGATGTGATGGATAAGAGGCTAGGGAATGCGTATAACGTTGACGAGGCTAGGAGGGTTGCTTTGGTGGCGGTTTGGTGCATTCAAGATGATGAAGGAATGAGACCTACAATGGGTATGGTGGTGAAGATGTTGGAGGGATTGGTGGAGGTGAGTGTTCCTCCACCTCCCAAGTTGCTACAAGCGCTGGTTACTGGGGATTCCTTTCATGGGGTCAAGGCTGATTCAGGCAATGGAGTCTCTACTGGTGGAAGCTTATCTGATGGCAATTTGGAAGTGTCAACTGCTGATTCTGAATCATACACAGGGAATGTTTTTTCTCCTTTAGATGTGAATGTCAATGTCAGTGTTCGATAA 2481 0.5232 MQFHNTMSLILILSLLLIFPSRGSVILQGNSRVKSPNNTFELGLFKFSPGPAKFYLGIRYTALPNPNTIWVANRLSPAPSLSASTLQLTETGQLILSHSNTTLWSTQKQKEKLKMKMKLLESGNLVLVSSEGVVAWQSFDYPADCWVPGMNLTRLNSLTSWRTESDPSPGLYSLRLKPPLYAQFELLFNHTFSYWSTGNWTNGSFLNVPEMSIPYLYSFHFLSPFSPAASFGFSERTSDTGLLLPTMFRLHPFGQIKQYTWNSQSRSWNFFWAKPEPLSQVPGLCGSFGLFTSQSSTFCQCLTGFQPFDAHSWSEGDYSRGCFRRDSACYGTDAFQRLADVIFSFGNVTVLSGNSRRFCQRHCLASCACVAFTFHQQPRFCNLFYGFLSDFQNSTGLGESGVLYVRVPRGRKCFDRKVLGAVVIGVVALLGVVVVILLVIVKRRGGKKGLEEDGFLLPVLNLKVFSYKELQLATRGFSDKVGHGGFGTVFQGELFDASIVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSVYLRKEGPTLNWDVRFRVAVGTAKGIAYLHEECRCCIIHCDIKPENILLDADFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELIGGRRNVEAPPSAGGGGDSGGETRGKWFFPPWAAQRIIEGNVSDVMDKRLGNAYNVDEARRVALVAVWCIQDDEGMRPTMGMVVKMLEGLVEVSVPPPPKLLQALVTGDSFHGVKADSGNGVSTGGSLSDGNLEVSTADSESYTGNVFSPLDVNVNVSVR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02056 826 ProSiteProfiles PAN/Apple domain profile. 329 408 IPR003609 -
Pste6g02056 826 Pfam D-mannose binding lectin 68 154 IPR001480 -
Pste6g02056 826 Pfam Protein kinase domain 479 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02056 826 FunFam S-receptor-like kinase 5 550 762 - -
Pste6g02056 826 PANTHER OS07G0415500 PROTEIN 8 766 - -
Pste6g02056 826 FunFam Receptor-like protein kinase 4 438 549 - -
Pste6g02056 826 ProSiteProfiles Protein kinase domain profile. 475 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02056 826 ProSiteProfiles Bulb-type lectin domain profile. 18 140 IPR001480 -
Pste6g02056 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Pste6g02056 826 CDD B_lectin 24 142 IPR001480 -
Pste6g02056 826 Gene3D Transferase(Phosphotransferase) domain 1 550 761 - -
Pste6g02056 826 Gene3D - 22 139 IPR036426 -
Pste6g02056 826 Gene3D Phosphorylase Kinase; domain 1 451 549 - -
Pste6g02056 826 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524
Pste6g02056 826 SMART serkin_6 475 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02056 826 PIRSF SRK 2 808 IPR024171 GO:0004674
Pste6g02056 826 CDD STKc_IRAK 481 756 - -
Pste6g02056 826 Pfam S-locus glycoprotein domain 195 307 IPR000858 GO:0048544
Pste6g02056 826 CDD PAN_AP_plant 332 408 - -
Pste6g02056 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 54 200 IPR036426 -
Pste6g02056 826 SUPERFAMILY Protein kinase-like (PK-like) 457 754 IPR011009 -
Pste6g02056 826 SMART ntp_6 330 407 IPR003609 -
Pste6g02056 826 SMART blect_4 24 142 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02056 Pste-Chr6 9647950 9650430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02056 465 763 Receptor kinase-like Gene Family AT5G20050 46.154 8.59e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pste6g02056 Pkinase 6.6e-45 CL0016