Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02054 TTTCTTCGTTTTTTGGTATTCCCGGTCATGCCGTCTCTGCTGCTGAATCTGACTTCCTTGTTTGATTGCTGCTTGCTCTTGTCAATTCTGTTTATTGCTTTGTTGAGTGGATTTTTTATCTTTTGATGTAATTTGTATGCTAATTGTGCTGTTGCATGTAATTTGGGTGATCATGAATCGGGTTGAAATATGGGCATGGTGCTTTGAGTTAAGCCATTTGTAACTTTTTTGCAACAGTACTATATTCTGTCATCTATTATGAGACTGTATGCTATTTGTTATTATGTTATTTATTTCTCAAAGTGAAGGGGTTGGCTTTTTTAGGACTGTGTAATTGATTGTTTCACTTTGTATTGTTTGCATAATTTTAAGTTGCCATTTGTTTCGTGAGATATAAACTTGTTTCTAATGTGAAATATATTTGTAGGTACTACTTTTTTTACTAGTGGTGGTAGAATGGATGCATAAAGTGTGGCGACCTCTGATCCTTTTTTGAGTCCAAATAACAGAAGAGAATGGGAGTTTCACCGGCAGGTTTAATTATTTAACAGAAAAGGACAGCTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCAAGGAACACCAGTGTATTACTATTGCCCCCCAACTTTAGAAGAGCGTGAGTCTTTAACATCTAATGATGGTACGGCGGCTTCACTCACTACTGGACTGCTGGTGGGCTTGAACCTGGAAACTTCTACACCTGATACATACCAGGCCCCTCCTGCACCTCTGCCTTATGATACGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGTAGAGAAACAGTTAGTGGTAGCAGCTTTGGAACGTTACTTACATGTGAAGATCTTGAAGAATCTGACTGTAAAGCTAAAGCTAATTCAGCACCTATATCTCCAAACAAGGCAGAACTTTCAAAATCAAATGAATATCATACATTAGTGACCGAAGAAGAGGACGGATGTCCGATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACACTGAACTAGTTCTGTTGTTTAAAAGAAAAAGAGCTGGCTAAATGTGTGAAAGATAGATGAAAGTCATTGTTTGATAGCTGGTTAGAAGGTAGTACAAATTCATTTCAATTCCTAGAGCATTTAAAAAGGTCGTTGTTTTAGTGGGCCCATTCATCAGGTGTACTGTCTGTGAGAAGAAGAATCGGAAGGCTTTGACAGAATGCTACACCACATTTCATGTCTGTTTTGATTGCAAATCCTCATGTTGAATTTTACCTATTATCAGTGAAAGAATGCATCTTTTCTCAAGATGAAAACATTCATGTTCATAGAATGGCTTTCGTTCCACACCCTATGTTGCTTTGCTGCTCTCCATTTCTTGTACAAATTTCTCAATATTTATTTGTTTTTCTATGTTTTCTTTGTGAGAGGAAAAAAACATGCATACTGGTGTTGTAAATCAAGCCTGCTCTGTTTTAGCACATTTTCAATGTATATATTGTGGTGGATGTTGCAGATCGCATCTTTTATTGTATACACTGAACCCCTTTTGTATTCAATGAAAATCTCGTAAGCCTGGTGACAAAATGGGGTAA 1710 0.3807 MGGCCCSARKPHLQGTPVYYYCPPTLEERESLTSNDGTAASLTTGLLVGLNLETSTPDTYQAPPAPLPYDTVLGGPASTDSESGRETVSGSSFGTLLTCEDLEESDCKAKANSAPISPNKAELSKSNEYHTLVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02054 191 SUPERFAMILY RING/U-box 130 187 - -
Pste6g02054 191 Pfam Ring finger domain 140 180 IPR001841 -
Pste6g02054 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Pste6g02054 191 CDD RING-H2_AIRP1-like 136 184 - -
Pste6g02054 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Pste6g02054 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 188 - -
Pste6g02054 191 SMART ring_2 140 180 IPR001841 -
Pste6g02054 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02054 Pste-Chr6 9639852 9643999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02054 1 191 C3H Transcription Factor Family AT4G00335 62.304 1.37e-82 241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01350 5 8734811 8739009 Pste6g02054 6 9639852 9643999 PCT