Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02041 atgggtaaccctaacagtgaggagaagaggctgcaagaggagatgctggagacgatcttactgggagagagagtgataaaaatggctgaggagggggagtcgtcgaaggtggactgcagggagctggggaggaaggtgcaggtggtgtgcgacaacctgaggtcggtggtgagggtggtgtcggggggccagtgcgtgaacgagagaccgatacgccgcatcgtgggggaggtgtcgaaaaacctagagcgtacgttagccctggtgcggaagtgcaagaagcacgggggcgtcctccgccaggtgttctccatgacgaccactgccgactttcggaaagtgtggagccttcttgaatcgtctatcggggacatggtgtggctgcttagcatcttggactcgaaggagggcacaaatgtctcccttcctcccatcgccagcaacgaccctattcttgcctgggtttggagcttaacctacaccctccaattgggccagcccaaagaccgcgccgacgccgccaccgaactgggttccctcgccagagacaacgagcgcaccaaattcatcatcttggaggaaggtggagtccctcccctcctcaagcttctcaaggaaccttcttcccctgacgctcaagttgccgctgccaatgctctttctaccattactaccaatcaggatcgggtcgttcatttcatcgttgactcccatgctgtcccctccattgttcaggtcctcgctgactcccccatgagggttcgtgtttctgttgccaatttggtctcctccttggtcgaccaacatgtccatgctcgcgaggagtttgttagggccaacgtcactcgaccccttgtttccctgttgtccgtcgacactgtcctctccgaccccatgtccgttcgcgcctcccttcattctcttgttctcaatttgtccaatgtttgcctggccacctctgatggcagtatccgtccctccacccaccatcgcagggataaagataaggacttcgagagccccgacttgctcaataagctcaaaataagctgtgctaaggctctttggaaactctccaaacactgtcttttaagttgcaagaagattaccgagactaaaggtttgctttgtcttgccaagatcattgagtcccagactggggaattgcagttcaattgtcttatggctgtcatggagatatctgctgtggccgagtccaatgctgatcttagaagaaccgcttttaagcgaactgctcctgccgcaaaagccgttttggatcagcttttgagggtcgctccggaagagaccgatccttcattgcagattcctgccattaaagcaattggttccttggccagaaacttctctgggaaggttcccgaagttctcggtcctttagtcgcccaacttggtaacagagatgttgatgtcgccagtgaggctgccattgctttggggaagtttgtttgccccgacaactacaactgtattgaccattctaaggcaatacttgagcttgatgggattcctaagttaatgaccctgctgcagaaaaatgatcgccaacaagttcatggcctgaaattactttgttaccttgccttgaatgtaggtaacagtaagatccttgagcaagaacgtgccttgaataccctagagaggtttgctcgtcctgttcaagcccattatcctgatttgaaggatcttcttgaaaaggccatgcaccacctcactctttatcagccaggagctcaattgcacagacagcctttggggttgtaa 1785 0.0 MGNPNSEEKRLQEEMLETILLGERVIKMAEEGESSKVDCRELGRKVQVVCDNLRSVVRVVSGGQCVNERPIRRIVGEVSKNLERTLALVRKCKKHGGVLRQVFSMTTTADFRKVWSLLESSIGDMVWLLSILDSKEGTNVSLPPIASNDPILAWVWSLTYTLQLGQPKDRADAATELGSLARDNERTKFIILEEGGVPPLLKLLKEPSSPDAQVAAANALSTITTNQDRVVHFIVDSHAVPSIVQVLADSPMRVRVSVANLVSSLVDQHVHAREEFVRANVTRPLVSLLSVDTVLSDPMSVRASLHSLVLNLSNVCLATSDGSIRPSTHHRRDKDKDFESPDLLNKLKISCAKALWKLSKHCLLSCKKITETKGLLCLAKIIESQTGELQFNCLMAVMEISAVAESNADLRRTAFKRTAPAAKAVLDQLLRVAPEETDPSLQIPAIKAIGSLARNFSGKVPEVLGPLVAQLGNRDVDVASEAAIALGKFVCPDNYNCIDHSKAILELDGIPKLMTLLQKNDRQQVHGLKLLCYLALNVGNSKILEQERALNTLERFARPVQAHYPDLKDLLEKAMHHLTLYQPGAQLHRQPLGL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02041 594 Gene3D - 332 579 IPR011989 -
Pste6g02041 594 SMART arm_5 269 314 IPR000225 GO:0005515
Pste6g02041 594 SMART arm_5 413 454 IPR000225 GO:0005515
Pste6g02041 594 SMART arm_5 183 225 IPR000225 GO:0005515
Pste6g02041 594 SMART arm_5 497 536 IPR000225 GO:0005515
Pste6g02041 594 SMART arm_5 226 267 IPR000225 GO:0005515
Pste6g02041 594 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 228 IPR000225 GO:0005515
Pste6g02041 594 Pfam Armadillo/beta-catenin-like repeat 187 224 IPR000225 GO:0005515
Pste6g02041 594 Gene3D - 13 131 IPR036537 GO:0007166
Pste6g02041 594 Gene3D - 161 329 IPR011989 -
Pste6g02041 594 PANTHER ARMADILLO REPEAT ONLY 4 11 582 - -
Pste6g02041 594 SUPERFAMILY ARM repeat 166 557 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02041 Pste-Chr6 9560736 9564258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02041 146 265 U-box Gene Family AT3G46510 34.426 2.12e-07 52.0