Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02034 ATGGGTTTTCCGGTGGGTTATGCGGAAGTGTTCTTCCCAAACCCGTTCCTTCACACGCTGACCCTCCTCGGCCTCCTCCGAAACCTTGTATTCTTCCTCTTTCACCTCCTCGGACTCTCCGACTTCCTCGAAACGGAAGTGGCCTGGCCGGAGCCCCGCCCCTCCGACGCCGCCAAACCCCCCTCGATCTCGGCGGTCCTCATCCGCGACCTCCTCCCCCTCGCCAAGTTCGGAGACTCCGACGCCTCGGCTCGCGAAAACGGCTGCGCCTGCGCTGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGTGCATGCGGAACTGCAACCACATTTTCCACCGCACCTGCGTCGACCGTTGGATCGACCACGATCACAAAACCTGCCCTCTTTGTAGGACTCCCTTTGTGCCCGATGATATGCTCGATGATTATAATCAACGCCTCTGGGCTGCTTCTGGGGTTAACGACTTTTACACCGATTACACTTCTTCCTTCTAA 504 0.5794 MGFPVGYAEVFFPNPFLHTLTLLGLLRNLVFFLFHLLGLSDFLETEVAWPEPRPSDAAKPPSISAVLIRDLLPLAKFGDSDASARENGCACAVCLFEFSEEEEIRCMRNCNHIFHRTCVDRWIDHDHKTCPLCRTPFVPDDMLDDYNQRLWAASGVNDFYTDYTSSF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02034 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 139 IPR013083 -
Pste6g02034 167 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Pste6g02034 167 SMART ring_2 91 133 IPR001841 -
Pste6g02034 167 Pfam Ring finger domain 90 134 IPR001841 -
Pste6g02034 167 SUPERFAMILY RING/U-box 90 141 - -
Pste6g02034 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02034 Pste-Chr6 9523316 9523819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02034 1 166 C3H Transcription Factor Family AT1G63840 46.784 1.76e-48 152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g01346 5 8706326 8706817 Pste6g02034 6 9523316 9523819 PCT