Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02032 atggtttgcttgtggttccacaatttaacacctatttttgttgcacccgctgaagatgccactggctccatttcttcctctgccaacatcgctacttcccttgactatgaaggagcattgaacggtggcggtggtgaggaaaagagtaaagttggacgtgtcagtaagcaaaagaagagattgccctttttccgaaaccctaaccagatgaacccctacgacaatagatactccgacgccgcttcttttcgtggccgtcgcagtgatttcgttggatctattccgccgccttcttttgcgggacgcggtggcgctgtcccctacggcgctacttacggcgtccacagatccaacggctttggatccgctcccgttgctcctgttccaccctttgtgcctcctcctgggggctttagcgttggtcgcggtggtggtagaatcggcaatggtcacgtgagtgatagaaaacatgactttggtcgtggcggtggtggaagaggccgcggcggcggtgctagagccggtgctcacggttttaggggtcccgggaggggaggtagacacggcggtggatcttctaaggacgatttgaacaacattgctcttccgaagcaggactttaagaatttggtcccttttgagaagaatttctacgttgagtgccctgcggtgagggccatgtcggagcaagaagtcgtgcattaccgtgccagcagagagatcaccgtgcaagggcatgatgtgccgaagcctgtacggatgtttcatgaggccaattatcctgattactgccttgaagttattgccaatctgggttttgctgagcccactccaattcaggctcaggggtggcccatggctctgaagggcagagatttaatcggcattgctgagactggttcgggtaaaactttggcctatttgcttcctgctctagtgcatgttaatgcacaaccacgattggcacatggggatggtcctattgtcttagttttagcaccaactagagagttagctgttcaaattcaagaagaagctctgaaatttgggtctcgagcaaatattagaagtacgtgcatctatggtggtgctccaaagggcccccaaattcgtgagcttaaaagaggcgttgagattgttattgctacacctggtcgtttaatagatatgttggaagctcagcacacaaatctgcagagagtgacttaccttgtcttggatgaagctgatcgaatgctggacatgggttttgaacctcagatacggaaaattgttggccagattcgaccagataggcaaacattactatggagtgctacatggcctagggaggttgaaactctggcaaggcagttcttgcgtaacccatacaaggcaattattgggtcgccagaacttaaggcaaatcaatctataaatcaagttgttgaagttgtaacagacatggagaaatacaatagattaatcaggctacttaaagaagtgatggatggaagccgaattttaatatttatggagacgaaaaagggatgtgatcaagttacaagacaaatgagaatggatggatggccagcactatccatccatggtgataaaaaccaggctgaaagggattgggtcttggctgaatttaagagtggcagaagtccaataatgactgccactgatgttgctgcacggggtcttgtcagtagactgcctgctgctgttaatttgggaactatcttttttagagatgtgaaggacattaaatgtgtgatcaattatgattttccatcaagcctggaagattatgtccacagaattggccgaactggtcgtgcaggtgctaaaggaactgcatacaccttttttacacatgcgaatgccaagtatgctagggatctgatcaagattttacagaatgctggtcaggttgtgagtcctgcattgtctgcattggttcggtcagctggttctggtcaatttggatcagggggaggttttcgctcaagaggacgaggaggctatggaaatcgaggtttaacatcaggttccaatgccattcctctaggttcgaagaggccttggcagtgtctatag 2082 0.0 MVCLWFHNLTPIFVAPAEDATGSISSSANIATSLDYEGALNGGGGEEKSKVGRVSKQKKRLPFFRNPNQMNPYDNRYSDAASFRGRRSDFVGSIPPPSFAGRGGAVPYGATYGVHRSNGFGSAPVAPVPPFVPPPGGFSVGRGGGRIGNGHVSDRKHDFGRGGGGRGRGGGARAGAHGFRGPGRGGRHGGGSSKDDLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVVHYRASREITVQGHDVPKPVRMFHEANYPDYCLEVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANIRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLLWSATWPREVETLARQFLRNPYKAIIGSPELKANQSINQVVEVVTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLVSRLPAAVNLGTIFFRDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKYARDLIKILQNAGQVVSPALSALVRSAGSGQFGSGGGFRSRGRGGYGNRGLTSGSNAIPLGSKRPWQCL 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02032 693 Pfam DEAD/DEAH box helicase 277 448 IPR011545 GO:0003676|GO:0005524
Pste6g02032 693 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 459 IPR014001 -
Pste6g02032 693 SMART helicmild6 512 609 IPR001650 -
Pste6g02032 693 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 253 281 IPR014014 GO:0003724
Pste6g02032 693 Gene3D - 218 462 IPR027417 -
Pste6g02032 693 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 405 413 IPR000629 -
Pste6g02032 693 MobiDBLite consensus disorder prediction 149 163 - -
Pste6g02032 693 CDD SF2_C_DEAD 472 618 - -
Pste6g02032 693 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 648 IPR001650 -
Pste6g02032 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 645 IPR027417 -
Pste6g02032 693 MobiDBLite consensus disorder prediction 145 198 - -
Pste6g02032 693 FunFam probable ATP-dependent RNA helicase DDX17 215 462 - -
Pste6g02032 693 Gene3D - 463 651 IPR027417 -
Pste6g02032 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 460 IPR027417 -
Pste6g02032 693 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 230 647 - -
Pste6g02032 693 CDD DEADc_DDX5_DDX17 265 458 - -
Pste6g02032 693 Pfam Helicase conserved C-terminal domain 483 609 IPR001650 -
Pste6g02032 693 FunFam ATP-dependent RNA helicase RhlB 463 651 - -
Pste6g02032 693 SMART ultradead3 272 475 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02032 Pste-Chr6 9512296 9518547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02032 250 629 Eukaryotic Initiation Factors Gene Family AT3G19760 34.646 6.58e-66 221