Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02007 atggctatttccgccgcggcagctacttctaaactggcatgcccccatcccttcaattgcctctttctcacctctcacactccctctgccacccacctctcctcttccttcatccacccctccactgtcctccaccttagtcccaccccctccgctaccgccatcccccgccgccgctccctcaccctccgcgccgcccgcagcaagttcgagcgcaagaagccccacgtcaacatcggtacaatcggccacgtcgaccacggcaaaaccaccctcaccgccgccctcaccatggccctcgcctccctcggcaacagcgcccccaaaaaatacgatgaaatcgacgccgcccccgaagagcgcgcccgcggtatcactatcaacaccgccaccgtcgagtacgagaccgagagccgccactacgcccacgtcgactgccccggccacgctgactacgtcaagaacatgatcaccggcgccgcccagatggacggcgccatcctcgtcgtctccggcgctgacggcccaatgccccagactaaggaacacattctcttggccaaacaagttggtgtccccaacattgtcgtctttctcaacaaacaggaccaagttgatgacgaagagcttcttcagttggttgaattggaggttcgtgagcttctttcctcctacgagttccctggcgatgatgttcccattatttctggctctgctcttttggctttggaagctttgatggccaacccttccatcaagcgcggcgaaaaccaatgggttgataagatttacgagcttatggattctgtagataactacattcctattcctcaacgccaaaccgatcttccatttttgttggcaattgaggatgtttttaccatcaccggtcgtggaactgttgccactggccgggttgagagagggactattagggttggagacacggttgatattgttggtgttaaggaaaccaggaacaccaccgtcactggggtggaaatgtttcagaagattttggatgaggctttggctggggacaatgtcggtttgttgcttaggggtattcagaagactgatattcagagagggatggttttgtccaagcctggaaccattacccctcacaccaagttttctgcaattgtgtatgttttgaagaaggaggagggtggcaggcactctcccttctttgctggttacaggcctcaattctacatgaggactactgatgttactggcaaagtaactgccatcatgaatgacaaggatgaggagtccaagatggttatgcctggtgaccgtgtaaagatggtcgttgaacttattgtgcctgtcgcttgtgaacaaggaatgaggtttgctattagagaaggaggcaaaactgttggagctggtgttatccaatctatcattgagtaa 1422 0.0 MAISAAAATSKLACPHPFNCLFLTSHTPSATHLSSSFIHPSTVLHLSPTPSATAIPRRRSLTLRAARSKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDNYIPIPQRQTDLPFLLAIEDVFTITGRGTVATGRVERGTIRVGDTVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLSKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02007 473 FunFam Elongation factor Tu 412 472 - -
Pste6g02007 473 CDD EFTU_III 374 468 - -
Pste6g02007 473 FunFam Elongation factor Tu 280 408 - -
Pste6g02007 473 Pfam Elongation factor Tu C-terminal domain 372 471 IPR004160 -
Pste6g02007 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 300 IPR027417 -
Pste6g02007 473 Gene3D Translation factors 280 408 - -
Pste6g02007 473 NCBIfam small GTP-binding protein domain 77 209 IPR005225 GO:0005525
Pste6g02007 473 FunFam Elongation factor Tu 65 277 - -
Pste6g02007 473 Pfam Elongation factor Tu domain 2 299 367 IPR004161 GO:0005525
Pste6g02007 473 SUPERFAMILY Translation proteins 279 375 IPR009000 -
Pste6g02007 473 Gene3D - 66 277 IPR027417 -
Pste6g02007 473 PANTHER ELONGATION FACTOR TU-RELATED 52 472 - -
Pste6g02007 473 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 74 278 IPR000795 GO:0003924|GO:0005525
Pste6g02007 473 Hamap Elongation factor Tu [tuf]. 65 473 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pste6g02007 473 CDD EF_Tu 75 277 IPR041709 -
Pste6g02007 473 NCBIfam elongation factor Tu 66 473 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pste6g02007 473 Gene3D Translation factors 412 472 - -
Pste6g02007 473 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 372 472 IPR009001 -
Pste6g02007 473 Pfam Elongation factor Tu GTP binding domain 74 275 IPR000795 GO:0003924|GO:0005525
Pste6g02007 473 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 115 130 IPR031157 -
Pste6g02007 473 CDD EFTU_II 285 371 IPR033720 -
Pste6g02007 473 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Pste6g02007 473 PRINTS GTP-binding elongation factor signature 122 130 IPR000795 GO:0003924|GO:0005525
Pste6g02007 473 PRINTS GTP-binding elongation factor signature 142 152 IPR000795 GO:0003924|GO:0005525
Pste6g02007 473 PRINTS GTP-binding elongation factor signature 158 169 IPR000795 GO:0003924|GO:0005525
Pste6g02007 473 PRINTS GTP-binding elongation factor signature 78 91 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02007 Pste-Chr6 9378999 9380837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02007 72 471 Eukaryotic Initiation Factors Gene Family AT5G60390 29.888 1.54e-45 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02007 6 9378999 9380837 Pste6g02007 6 9378999 9380837 ECH
Pste6g02007 6 9378999 9380837 Pste2g00544 2 5114021 5115465 PCT