Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01978 GAAGGTACAGAGTATAGACCGAAAGGGAAAACGAAATCCGGTTAGTACCCGCGATTCCCAAACCCATCTTCCTTCTTCCGCCTATAAACGTAGTTTTGCCGCCACCAACCTTCGTGGGATTCGTTTGGTCACGCGCCAATTGAAAACCAATTCCTTTGATTACTCATTCGTTCTTCCTTCTGCGAATCCCAATTCCATGTCAATTTATTCTCAAACCAATATTTTTTATTCTTTAAATCCTTTATCATTTTCTATTTCTGCGAAATTCACAATTCAGATTCACACTCACGTGACTCGCACGCCGTCCTTGCCTCTTTTCTCTTTCCCGCCCTCGGAAATATTCACCTCGCGCCGCTTTCAAATTCTCCCTCACTTTCCCACTATTTTTTTTTCTCGGGAAAACAAGTGAGGCCAGAAAATAGCACTCACTGAGAGAAAGTATAGCCCGTTCAGTTCAATTCAACGACCACACCACGCGATGGTGGACGCCGGCGACTTCGCCGGAATAATTTGTTCGATCTGCTACGAACCCCTCAAGCCCATTAGCGAGGACCTTCAATCGGTCTCCGTCTGCGGCCACGTCTTTCACGAGCTCTGTCTGCAGCAATGGTTCGAGTACTGTTCGAGAGGGAAGAAGCACAATTGTCCTATTTGCAAGCAAAGTTGCAAGGCCAGCAACGCGTGCAGGCTCTATTTTCAGTCAGTGGGAGATGCGAACGATGGTGTGAAGTCTCAGAAGAGCTTTGAATTGGAGGAAGATGCTGGGGTTCTGCGTAGGGAAATGAAGAGATTGGATGTGAAACTCTGTACTTGCAAAGAGCAGGCAAAGGTAGAAATGGCGTTAAAGAATGAGGCTTTAAATCAAAAAGCATCCATACAATTCCAGCTTCAAATGAAATCACAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTGAAAGAAAGGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAGTTAGTATCGGATCTGGACATTGATGAAGAGGAGGTCTTGAAGCTTGCAACTTTGGGTAATGGGACCAACAGTAAAGACACAATAGATACATTGAAAAGATCTCTAGTCATGCGGAATAGGAGTTATAAAGAATTGATGGCCAAGTGCAATATTCTCGGAAGAGGTGAAGCTCGATATAGCAAAAAGCTTGATAAGGCTAAAGAGAAGATCGCTAAACTGAAGGGGAGGGTACATGAACTGGAGACATTAACTGAAACAAAAGAGAATGAATATCTGATGTCACTGAAACTTTCAAAAAAAACAAAGAGTTCAAAGAATCTTGATAATAATATAAACTCTGATTCTGATGCATTGAGAGCTTGCAAATTTTCATTAAAAGAACAAACCAAACAAATTTCAACACCCAAATTGGGAATGGACCTGACTGCAAACGACAACAGTAAATGTTTTCAATCTTTGAAGAAAGAAAGCTCCAATGTTACTAAAACTGAGACTCTGAATATTAGTAATGGAAGTAGAACTACCTTTTCTCTTGATAAAAGGAGAGATTATATCTCAATTGATGACGATGATGATTCAGAAGGCACTAAAGCTTTGCAAGGATGTTCAAAACACCGCTACAAAGATCAAGATGGGGATGATATTGCTTTTAGCAAGCCTCCTCTAGCGAAGCTAGAGGCTCTGTCTGGCATAAAGATCGGTGTATCATTGCATGAAAAATGTAATTTGGCCGAGTCTCCTGGAGTTGATATTGAAGCTGACATGACTAACATTTCAGCTGGTGCTGTGGATGAGGATGTAACTTTACTAGCCAATGTTAAACAACCAATGATGAACATTAGAAAGGAGTCACCATTGACAGTTTCAAATTCAGCACCTGGTACCATCTGTTTTTCTGGTGGATTGCTTGGTCCTGATGGAAGTCATCGATACCTGGGTAAATGGTGCAAGCGTGGACAGAATAATGAATTATCATCTGCAAAACGTTCAAGTAATGGGGATTTGATAGCTACTGGGGCTGATGGAAGAGGTGGCAGAATAAAAGTTCTAAGGACTCCTAGCCAAATCCTCTCGAGTGGTAAGGAAACTTCAGTAAGTTCGAAAAGGTCAAAGTTAGGAGCTAAAACAAGTAGTATGCAATCCCAGGGGTGCCTGCAGATAGAACACTTTTTTGGTAGAGTCTCTCAGTAATATATTGGTCTCTCTGAGCGCGGTTGTGATGTCCTTGTTGCAAAGAGTAAAGGAATGGATCCTTTGTCACAGAAGGGAAACGATGGAAGGTTAAAGAGATTTCATGTTTGGAAAAATTTTCATCGCTATGAATAAAATGAGCTTTGGGGATTTTGATTAAACGTGCACCAAAATCTAGTAATTGATTCCTAGGCTTCAGTATCTATTCAAATGGCAAACTTTTACTTCCGTTTGCACCATTCAGGTTCTATCTTTAACCAAATTCTGCCCTCGTTTGAAACAATGCAATATTAAAGAGCTCAGATCTGGTTAAAGAAGATATCTTCGTATTTTTTAATTTTGAAGATAGGTCGAAATCCAAAGTTTCTTAAATAACTTTGATTTTGGATTCATTTTTAATGATACCTTGTAATAGCCTTGTA 2598 0.4049 MVDAGDFAGIICSICYEPLKPISEDLQSVSVCGHVFHELCLQQWFEYCSRGKKHNCPICKQSCKASNACRLYFQSVGDANDGVKSQKSFELEEDAGVLRREMKRLDVKLCTCKEQAKVEMALKNEALNQKASIQFQLQMKSQELEKSTLECFRLKERNMALAKELAALKLVSDLDIDEEEVLKLATLGNGTNSKDTIDTLKRSLVMRNRSYKELMAKCNILGRGEARYSKKLDKAKEKIAKLKGRVHELETLTETKENEYLMSLKLSKKTKSSKNLDNNINSDSDALRACKFSLKEQTKQISTPKLGMDLTANDNSKCFQSLKKESSNVTKTETLNISNGSRTTFSLDKRRDYISIDDDDDSEGTKALQGCSKHRYKDQDGDDIAFSKPPLAKLEALSGIKIGVSLHEKCNLAESPGVDIEADMTNISAGAVDEDVTLLANVKQPMMNIRKESPLTVSNSAPGTICFSGGLLGPDGSHRYLGKWCKRGQNNELSSAKRSSNGDLIATGADGRGGRIKVLRTPSQILSSGKETSVSSKRSKLGAKTSSMQSQGCLQIEHFFGRVSQ 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01978 565 SMART ringv_2 11 60 IPR011016 GO:0008270
Pste6g01978 565 Pfam Ring finger domain 12 60 IPR001841 -
Pste6g01978 565 SUPERFAMILY RING/U-box 10 64 - -
Pste6g01978 565 Coils Coil 225 259 - -
Pste6g01978 565 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Pste6g01978 565 SMART ring_2 12 59 IPR001841 -
Pste6g01978 565 MobiDBLite consensus disorder prediction 527 546 - -
Pste6g01978 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 91 IPR013083 -
Pste6g01978 565 CDD RING-H2 12 60 - -
Pste6g01978 565 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 563 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01978 442 565 C3H Transcription Factor Family AT4G01270 46.457 1.00e-22 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01978 6 9176980 9182428 Pste6g01978 6 9176980 9182428 ECH