Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01962 atgtctttgtcgctcacaaccatacctggtgccttgaactctctcacaatggcagaatcgtgccttgtatcattcccttccctcttcttgtactccaaaaccaaatccccttctctctcaaatccctataagcccttcaacctccaacttccatgctccaaatcttcgctccttcccctcgccgccaagacaacgcgccacctcacattcgtggcccagacctctgattgggcccaagaagaagaagaagaggctccctgggagaaccaaggcgacaccgcctggggaactcaagagggtggcgatgacatagaagatgccgaggcccaagagggtttctctgaacctgaaccctctgaagaagttaaaatctttgttgggaacttgccttacgatgtcgatagtgagaaattggcctcgctttttgagcaggctggtaccgttgaggttgctgaggttatttataatagggtcactgaccggagtcgtggctttggatttgttaccatgagttctcttgaagagactgagaaggctgtccagatcttaagtggctatgaattaaatggaagagtgttgactgttaataaggctgctccaagaggtgtgcagcctgaacgtgcaccacgcccaccacgatcttttagttctagtttaagagtctatgttggcaacttgccatgggatgttgacaatgcccggctagagcaaattttcagtgaacacggtaaggttgaggatgcacgggttgtctatgacagagacactggtcgatcacgtggttttggttttgtcacaatgtccagtgagactgaaatgaatgacgcaattgcagccctcgatggtcagagcttggatgggagggcaatcagagtgaatgttgcagaggaaaggcctagacgcagctccttttga 915 0.0 MSLSLTTIPGALNSLTMAESCLVSFPSLFLYSKTKSPSLSNPYKPFNLQLPCSKSSLLPLAAKTTRHLTFVAQTSDWAQEEEEEAPWENQGDTAWGTQEGGDDIEDAEAQEGFSEPEPSEEVKIFVGNLPYDVDSEKLASLFEQAGTVEVAEVIYNRVTDRSRGFGFVTMSSLEETEKAVQILSGYELNGRVLTVNKAAPRGVQPERAPRPPRSFSSSLRVYVGNLPWDVDNARLEQIFSEHGKVEDARVVYDRDTGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRSSF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01962 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Pste6g01962 304 SMART rrm1_1 123 196 IPR000504 GO:0003723
Pste6g01962 304 SMART rrm1_1 220 293 IPR000504 GO:0003723
Pste6g01962 304 MobiDBLite consensus disorder prediction 78 102 - -
Pste6g01962 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Pste6g01962 304 SUPERFAMILY RNA-binding domain, RBD 115 214 IPR035979 GO:0003676
Pste6g01962 304 PANTHER OS02G0815200 PROTEIN 37 300 - -
Pste6g01962 304 FunFam 31 kDa ribonucleoprotein, chloroplastic 209 303 - -
Pste6g01962 304 Gene3D - 71 205 IPR012677 -
Pste6g01962 304 Gene3D - 206 303 IPR012677 -
Pste6g01962 304 CDD RRM2_NsCP33_like 220 295 - -
Pste6g01962 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Pste6g01962 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 291 IPR000504 GO:0003723
Pste6g01962 304 SUPERFAMILY RNA-binding domain, RBD 211 302 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01962 Pste-Chr6 9084892 9088659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01962 124 301 Eukaryotic Initiation Factors Gene Family AT3G16380 35.294 4.03e-23 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01962 6 9084892 9088659 Pste2g00525 2 4828156 4831428 ECH
Pste6g01962 6 9084892 9088659 Pste6g01962 6 9084892 9088659 ECH
Pste6g01962 6 9084892 9088659 Pste2g00525 2 4828156 4831428 PCT