Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01954 AATTCCCCATCTATTCATCAATGTCCTCCTATCCACCTCCCACCCCTTACTTAACAAACATAGGCTTCGGCTACTCCATCGCCATAGCCCTCGGAGTCCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCGTCGCCGCCATCAACACACCCCAGATGGCATCGTCCTCCCCCGCGTCATCTTCGTCGCCGAGGACGACCACCACCACAACGACCTCGCCTCGGGCCTCGACCAGGCCGTCATAAACTCCTACCCCAAGTTTCCCTACCTTAAGGAAGCTGGCTACGACCCCACGTGTTCCATCTGTCTCTGCGAATACAAGGATTCGGAGATGCTGAGGATGATGCCCGAGTGTCGTCACTACTTTCACTTGTGCTGTCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTTTGCCGCAACTCCCCCATGCCAACTCCCTTATCCACGCCTCTTCAAGAGGTCGTCCCTCTCTCGCACTTCGCCGCCGATTCCACCGCCAGGAGTTTTGTTGTTTTCATGCTAAGGCTGTATGAATATCTTTTCTTTGAGCTGCAAATGTTCGAACGCATGAAATTTCTCAATATTCTCAGTTCCAAAGAGAAGGGAATGGCAAAACAGAATGTTAATACAAAGTTGAAAAGATGGAGAAGTGTATATTATTTTATCTTCATACTGGGTGCTCTTGCTCTTCTCCTTTCTGTTGCTGCCATGTTCAAGTTCCTCTCCTTCAAATCATTTCTTGGTACTGAGTCCTTATACTCAAATCTGAATCCCGAGGTTCCAAACGAGAATCAAAATAAGGTGATGATGGTAACTGTTGAACTTGTAATTCAGAAAATTGAAGAGGAACTGAACAAACTGAGGGAAGCAAAACAGGATCCATCATCATCCCAAACTGTATTCCAGCAAGGAGCATTTCTTGCTGATATATTAGGACTTCTCGAGTCTGCTGCATCATCTCATCAACACAGTGAAGGGAATAATAAGCAAAATGGTAGTTTCACCATTCATCATCCTCTGGTGAGTAAAAAGAAACAATCTGATGAGCCTGCTGATTACTTTCTGCGAGAAGAGATTCGCAAGTATGTCAGGATCAAGCCTAACAGATTAGGAAAACAAAATTTTATGGGGGCAAATGCAAGCTTCACCAGCATAGGACACACGTGCTTTGCCATGAAGGAAGAGCTAGAAGAATACATGGATTATGATGTTGGTGAGATCTGCAATGATGACTGGAAACTAGCTCAGAAACTTATGGTTCATGGCTGTGATCCTTTACCAAGGAGAAGGTGCTTTTCAAGGGCCCCTAAGTTATACAGCCAACCATTTCCCATCAATGAATCCTTGTGGAAACTCCCTGATGACAGAAATGTCAGATGGAGTCAATACCGATGCAAGAATTTCGCCTGTCTTGCCAGCAACACCACTCGTAAGGGATTCTTCAAGTGTGCAGACTGCTTCAACCTCACCAACCATGAGATGCCAAGATGGGTAAGCCTGGAAGCTGATTCTAATTATACAGCTGATTTCCTTATATCAGAGATTCTTGGAATTAAGCCAGAAGAGATCAGAATAGGATTGGACTACAGTGTTGGAACTGGGACTTTTGCTGCTAGGATGAGGGAATTCAATGTGACAATAGTTTCAGCCACTATTAATTTTGGAGCACCCTTCAATGAAATGATAGCTCTTAGAGGACTTGTTCCTCTCTACTTGACTATAAATCAAAGGCTTCCATTTTTCGACAACACCCTGGATTTGATTCACACAACAAGGTTTCTAGATGGGTGGATTGACTTTGTGCTCCTTGAGTTTATATTGTATGACTGGGATAGAGTTCTGAGGCCAGGGGGGTTGCTTTGGATTGACAGCTTTTTCTGCTTGAAGGAAGATTTGTATGATTACTTGAAGGCCTTCAAAATGCTGAGATATAAGAAGCATAAATGGGTGGTGGTTCCAAAGCTTGATAAGGATGATCAGGAAATGTTCTTCTCTGCTGTTTTAGAGAAGCCTCCTAGGCCATTCAGG 2060 0.4539 MSSYPPPTPYLTNIGFGYSIAIALGVLFLLSTLILSSYLCCRTLRRRRHQHTPDGIVLPRVIFVAEDDHHHNDLASGLDQAVINSYPKFPYLKEAGYDPTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHFAADSTARSFVVFMLRLYEYLFFELQMFERMKFLNILSSKEKGMAKQNVNTKLKRWRSVYYFIFILGALALLLSVAAMFKFLSFKSFLGTESLYSNLNPEVPNENQNKVMMVTVELVIQKIEEELNKLREAKQDPSSSQTVFQQGAFLADILGLLESAASSHQHSEGNNKQNGSFTIHHPLVSKKKQSDEPADYFLREEIRKYVRIKPNRLGKQNFMGANASFTSIGHTCFAMKEELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPKLYSQPFPINESLWKLPDDRNVRWSQYRCKNFACLASNTTRKGFFKCADCFNLTNHEMPRWVSLEADSNYTADFLISEILGIKPEEIRIGLDYSVGTGTFAARMREFNVTIVSATINFGAPFNEMIALRGLVPLYLTINQRLPFFDNTLDLIHTTRFLDGWIDFVLLEFILYDWDRVLRPGGLLWIDSFFCLKEDLYDYLKAFKMLRYKKHKWVVVPKLDKDDQEMFFSAVLEKPPRPFR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01954 680 Pfam Ring finger domain 100 143 IPR001841 -
Pste6g01954 680 Gene3D Vaccinia Virus protein VP39 511 669 IPR029063 -
Pste6g01954 680 CDD RING-H2_PA-TM-RING 100 143 - -
Pste6g01954 680 MobiDBLite consensus disorder prediction 325 352 - -
Pste6g01954 680 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 521 640 IPR004159 GO:0008168
Pste6g01954 680 SUPERFAMILY RING/U-box 82 147 - -
Pste6g01954 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 148 IPR013083 -
Pste6g01954 680 SMART ring_2 101 142 IPR001841 -
Pste6g01954 680 MobiDBLite consensus disorder prediction 325 341 - -
Pste6g01954 680 Coils Coil 274 297 - -
Pste6g01954 680 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Pste6g01954 680 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 236 678 - -
Pste6g01954 680 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 499 653 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01954 Pste-Chr6 9052713 9056114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01954 6 162 C3H Transcription Factor Family AT5G07040 41.975 2.11e-35 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01954 6 9052713 9056114 Pste6g01954 6 9052713 9056114 ECH
Pste5g01263 5 8157143 8157709 Pste6g01954 6 9052713 9056114 PCT