Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01928 atgaccaccacttacctctctctcctttatctcctcttctctctctccacccttatcctcatttcctcttccactctccaggaccctcaattcgtgaccctagaagtaaacaggaaaatcaatggctctctagcgaggaggaatttggggtatctttcctgtgggactgggaaccccattgatgactgttggaggtgcgaccccaactgggagaagaacaggcaaaggctagcggattgtgcaattggtttcgggaaaaacgccattggtggaaaaaacggaaaaatctacgtggtcaccgactccggcgacgatgaccccgtcagccctaagccggggacactccgttacgccgttattcaagacgagccactttggatcatattcgcaagagacatggtgattaagctgaaggaagagctcatcatgaactcgttcaaaaccatagatggaagaggcgctagcgtccacattgcgggtggtccatgcattactatacagtatgttaccaatgttataatccatgggatacatattcatgactgtaagcagggcgggaatgctatggtgcgggactccccacggcactacgggtggaggaccgtctcggatggcgatggcgtctccatctttggaggaagccacgtctgggttgaccattgctccttgtctaactgcaatgatggcttgatcgatgccattcacggctctaccgccattaccatctccaacaattacatgactcaccacgataaggtcatgcttttgggccacagcgattcctacactcaggacaagaacatgcaggtcaccattgctttcaaccactttggtgagggcctcgtccaaaggatgccaaggtgtaggcatggatactttcatgtggtcaacaatgactatacccactgggaaatgtatgctattggaggaagtgctaatccaaccatcaatagccaaggcaacaggtttgttgcaccaaatgacagattcagcaaagaggtgaccaagcatgaggatgcaccagagagtgaatggaagagttggaattggaggtcagaaggggacctactggtaaacggtgcctttttcacggcatcgggagctggagcctcctctagctatgcaagagcttcgagcctgagtgcaaggccatcttcactggtggggtccataaccactggtgcgggtgcactcaactgtagaaagggttcccgctgctga 1221 0.0 MTTTYLSLLYLLFSLSTLILISSSTLQDPQFVTLEVNRKINGSLARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVSPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWKSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01928 406 PANTHER PECTATE LYASE 18-RELATED 23 404 IPR045032 GO:0030570
Pste6g01928 406 SMART amb_all 132 329 IPR002022 -
Pste6g01928 406 FunFam Pectate lyase 57 399 - -
Pste6g01928 406 Gene3D - 57 399 IPR012334 -
Pste6g01928 406 SUPERFAMILY Pectin lyase-like 37 401 IPR011050 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Pste6g01928 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Pste6g01928 406 Pfam Pectate lyase 139 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01928 Pste-Chr6 8924514 8926768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01928 1 406 Polysaccharide Lyase AT5G63180 79.462 0.0 675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01928 6 8924514 8926768 Pste2g00495 2 4565004 4567260 ECH
Pste7g02355 7 22237761 22239577 Pste6g01928 6 8924514 8926768 ECH
Pste2g00495 2 4565004 4567260 Pste6g01928 6 8924514 8926768 ECH
Pste6g01928 6 8924514 8926768 Pste6g01928 6 8924514 8926768 ECH
Pste6g01928 6 8924514 8926768 Pste2g00495 2 4565004 4567260 PCT