Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01913 atggaaacagtacatttcgctgttgagatagataagaacgccttaacggggttggtttgcactgtttcatgtgggttttggttatgcaagagtgaggcagtgatggatggaaggaggcattctgttgatattcctatttccaaaactctagtggcactgaggagagtaaggtcattgagggatccatcaactaatggtgtcagcagactctctcctttgattgatgatggagattgggaaaatggttctagtaatggggtttccctgagtctgagtttccagaatgcttctcatgcatgtgattctgatggtaacggtcttttaagattaagtagtttagattttaagggacaaagagagcagcaggacattgctgaatttgaattggacatgttgaactctaaggtgaacggttgcgggatctcatcccaggaagggcaacgggatgatggactagtttactctaatcctaagcagcaaggtatttctagagataaatcaccaaatgaaagttgttgtagcaaccatgaaggcagaggattggatttcgtttccataatgcctccttgtaatcatttgatcgatggggaatcatgctatttgtcaactgcaatacgagtagagcactcaaagtcagcaagaaaatcactacgcaagaatcaagtgaaaccatctgaagtgatgggtgatattgcaagccatgtaggaagtcaacaatgcctttctgttcttggtgctttctcagctcgtagtgcctcagaacatattagtcaagatgttgatgttttagataataattaccatggatgtggattaaggagctgttggtcaaagtcaccaaggtatagagaatcaaatcattattctgaaatagaaggccttcccttgatattgcagcacgtaaatgagactgatctcgatgggtatagaaacatgagacacattggtggtgaaactagtccaactatggaaacacctagaagtttatctatgaaattcaggccaaaatctttcaatgatttggttggacaaaatgtgataggaaagtctcttttgggtgctatttctagaggaaggatatcatcaatttatctcttccatggtccacgtggcacaggaaagacctctgcgtctaggatatttgctgctgcactgaattgcctctctcctgtggagcaaaagccgtgtggtctgtgtagagaatgtgttttgttcttttctggaagaagtaaaaatgttaaggaagtggattctttgagaatcaatcgtgcagagaaggttaaatcccttgttaagcatgcatgcattcctccagtttcctcacgttttaaggtgttcattgttgatgaatgccagttattgcatggggaagcttgggcgtgtcttttaaatagcctagagaatgtttctccacatgtggtttttgtgatgatcactcctgatttggataagcttcctcggagtgcagtttcccggtctcagaggtatcaatttgcaaagattaaagatgctgacattgcaagaagattggaaaaaatttgtgttgaagaaggtcttgattctgaacaagttgctttagacttcattgctgctagatcctgtggttctcttagggatgcagaaactatgcttgatcaattgagtttgctcggtaaaaaaatcacaatttccttagtccacgaacttactggggtcatttctgatgatgaattgcttgacttgctgaacctggctttatcaactgacacttcaaatacagttataagagcccgggaacttgtcagatctagaatagatcctttacaacttatatcacaattggcaaatcttattatggacattcttgctgataaatgtgaacttggtgcttccgaaaccagaagaagattttgtaatagatatacctctgaagcagatctgcagaaactaagtcatgcattaagaatactgtctgaaacagagaagcagttgagaatttccaagaatcaaacaacatggttcactgcagctcttctacagttaagttctgtagaatattcatctgtggatgcaaatgatgcaaagttgtgcacgcgagattcgtccattagaggtgggcttggtttttatttctgcacttatggtgatatgtgcagtacatctcctaaaggggacagcttggagcatcttgctacaacaggtctgtgtgatgacaagtcatgtacattaggatttggagtaacggaggatcacaaaggaacattggattctatatggtataaagctactgagaggtgtcaatctagaaggctcaaaacttttctcaggaaacaggggaagttgtcttcagtttgtattagtcaaggccgtgcaattgccgagttggagttcgaccatcgtgactatgtacatagggctgagaagtcatggaagctgattgcaagttgtctgcagtttatattgggttgtaaccttgagctcagaataaattatgtaccttcttgtacttcagattctatatattctaaattgaagaggacatctttcaatttcttcggttgtcctcgtagaattcgttggaaatatttatcatctaatgaacaaggaagtgaatcataccatactgtttacacttctcaaaagcccatgatgaaggatcaaactcaatcctctgattgggaacctcgggtgccaccatttgagtcctatcgtggaatgcaggttgtaacaactttgagaagtagtgaaggaaatttgctaagctcagggaaaatgtttctgaataggtcagatcaagagcctcgaagaatttcttgttctagagttgattctctcaaggaagagggatgcaatcatgaacatctggcttcatcaacccttgatttagataatcattctgactgttttcctgggacccgctggcttcataaaaagttgtattcttcatatgcatcgcagcagaagaattttgttttatctatccccaagttcaaatgttctgattctcatagatatgatctggaaccctgtgtctttccccgcaactctaaaaactacaccaaagctattgaggaaaagtag 3060 0.0 METVHFAVEIDKNALTGLVCTVSCGFWLCKSEAVMDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSRLSPLIDDGDWENGSSNGVSLSLSFQNASHACDSDGNGLLRLSSLDFKGQREQQDIAEFELDMLNSKVNGCGISSQEGQRDDGLVYSNPKQQGISRDKSPNESCCSNHEGRGLDFVSIMPPCNHLIDGESCYLSTAIRVEHSKSARKSLRKNQVKPSEVMGDIASHVGSQQCLSVLGAFSARSASEHISQDVDVLDNNYHGCGLRSCWSKSPRYRESNHYSEIEGLPLILQHVNETDLDGYRNMRHIGGETSPTMETPRSLSMKFRPKSFNDLVGQNVIGKSLLGAISRGRISSIYLFHGPRGTGKTSASRIFAAALNCLSPVEQKPCGLCRECVLFFSGRSKNVKEVDSLRINRAEKVKSLVKHACIPPVSSRFKVFIVDECQLLHGEAWACLLNSLENVSPHVVFVMITPDLDKLPRSAVSRSQRYQFAKIKDADIARRLEKICVEEGLDSEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITISLVHELTGVISDDELLDLLNLALSTDTSNTVIRARELVRSRIDPLQLISQLANLIMDILADKCELGASETRRRFCNRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSVDANDAKLCTRDSSIRGGLGFYFCTYGDMCSTSPKGDSLEHLATTGLCDDKSCTLGFGVTEDHKGTLDSIWYKATERCQSRRLKTFLRKQGKLSSVCISQGRAIAELEFDHRDYVHRAEKSWKLIASCLQFILGCNLELRINYVPSCTSDSIYSKLKRTSFNFFGCPRRIRWKYLSSNEQGSESYHTVYTSQKPMMKDQTQSSDWEPRVPPFESYRGMQVVTTLRSSEGNLLSSGKMFLNRSDQEPRRISCSRVDSLKEEGCNHEHLASSTLDLDNHSDCFPGTRWLHKKLYSSYASQQKNFVLSIPKFKCSDSHRYDLEPCVFPRNSKNYTKAIEEK 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01913 1019 Gene3D - 502 564 - -
Pste6g01913 1019 Gene3D - 321 499 IPR027417 -
Pste6g01913 1019 NCBIfam DNA polymerase III subunit gamma/tau 328 674 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pste6g01913 1019 Gene3D - 565 678 - -
Pste6g01913 1019 MobiDBLite consensus disorder prediction 143 171 - -
Pste6g01913 1019 FunFam Protein STICHEL-like 1 isoform C 565 678 - -
Pste6g01913 1019 CDD HLD_clamp_pol_III_gamma_tau 501 564 IPR045085 -
Pste6g01913 1019 SMART AAA_5 360 503 IPR003593 GO:0016887
Pste6g01913 1019 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 329 757 - -
Pste6g01913 1019 MobiDBLite consensus disorder prediction 143 169 - -
Pste6g01913 1019 FunFam DNA polymerase III subunit gamma/tau 502 564 - -
Pste6g01913 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 551 IPR027417 -
Pste6g01913 1019 SUPERFAMILY post-AAA+ oligomerization domain-like 571 672 IPR008921 GO:0003677|GO:0006260
Pste6g01913 1019 Pfam DNA polymerase III, delta subunit 344 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01913 Pste-Chr6 8840417 8846417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01913 320 617 Core DNA Replication Machinery Family AT1G21690 24.503 7.39e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01913 6 8840417 8846417 Pste6g01913 6 8840417 8846417 ECH
Pste6g01913 6 8840417 8846417 Pste2g00488 2 4467535 4471462 PCT