Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01911 atggcttcgagcgaggggtttctgacggacgggcagagggaactgctaaaaattgcaagtcaaaatgcggagagtctgtcttcgtcgcccaagtctccatcgtccttgctttctgaccatcatgtgaaagcccctgctggtggtaaggcgcaaaccgctgggatagctgtgaggcatgtgcgtaggtcacactcgggaaagtgtcgagtgaagaaggatggtgctggtggtaagggtacttgggggaaattgcttgatacagatgttgattctcggattgacaggaatgatccaaattatgacagtggcgaggaaccttatcagctggttggatctactgttactgatcccttggatgaattcaagaaagcagtagtatccatcatagaggaatattttagtaatggggatgtggaattgacagcatctgacctcagagaacttggctcaagtgaatactatccatacttcattaagcgcctcgtctccatggcaatggacaggcacgataaggagaaagaaatggcttctgttctgctttctgcattgtatgcagatgtcatcagccctgcacagattagggatgggttttttatacttcttgaatctgctgatgatcttgctgtggatatactggatgcagttgatatccttgcattatttttagcacgagctgttgttgacgacattcttcctccagcctttcttgccagggctaggaaggctcttccggaatcttccaagggagttcaggtaatccagactgctgaaaagagtcatctttcagctccacaccatgcagaacttgtggaaaggcgctggggtggtagcactcacataactgttgaagaagtgaagaagaagatagctgatttacttagagaatatgtagatagtggtgatacattggaagcctgtaggtgtatacgtgagttgggggtttcattctttcatcatgaggttgttaagagggctctgatattcgccatggagattcgttcagcagaacctctaatgttgaagctattaaaagaagcagcagaagaaggacttattagttccagccaaatggtgaaagggttctcccgtttggctgaatctcttgatgatcttgctcttgacattccatcagctaaggcattgtttcagtcatttgtccccaaggcaatatctgaaggatggcttgatgcttcacttaccaaacctgcaactgaagacggggaaatccaagttgaagatgaggtggtgaggaagtacaaaaaggaagctgtaactataattcatgagtattttctttctgatgacattcctgaactgattcgaagtcttgaagatcttggagcacctgagtataatccagtatttttgaagaagctaataactcttgctatggaccgaaagaacagagaaaaggaaatggcttctgtactgctatctgctcttcatatagagatcttctctacagaggatatagttaatggttttgtcatgcttcttgaaagtgcagaggatacagcacttgatatattggatgcctcaaatgagctggctctgttcgtagctcgggctgttattgatgatgtattagctccactgaatttggaagaaattggcagcaggttgccaccaaaatgcagtggtagtgaaactgtgcgcatggcgcggtcactcattgctgctcggcatgctggggagaggctattgagatgctggggtggaggaacgggatgggctgtggaggatgctaaggacaagatcatgaagctcttggaggagtacgagagtggcggggttgtgagtgaagcatgccagtgcatacgtgacctgggaatgcctttcttcaaccatgaggtagtaaagaaagctttgattatggcgatggagaaaaagaatgatcgaatgctcgatctattgcaggagtgcttcagtgaaggcctgatcaccattaatcagatgactaaaggtttcacccgaataaaggatggtcttgatgatctggctctagacattccaaatgcaaagcagaaatttggtttctatgtggaacatgctcagtccatgggctggcttctaccatcatttgattcgcctgccacagatgtttaa 2106 0.0 MASSEGFLTDGQRELLKIASQNAESLSSSPKSPSSLLSDHHVKAPAGGKAQTAGIAVRHVRRSHSGKCRVKKDGAGGKGTWGKLLDTDVDSRIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVELTASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGVQVIQTAEKSHLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALIFAMEIRSAEPLMLKLLKEAAEEGLISSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPATEDGEIQVEDEVVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPVFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFVARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAKQKFGFYVEHAQSMGWLLPSFDSPATDV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01911 701 ProSiteProfiles MI domain profile. 418 539 IPR003891 -
Pste6g01911 701 ProSiteProfiles MI domain profile. 120 241 IPR003891 -
Pste6g01911 701 MobiDBLite consensus disorder prediction 1 54 - -
Pste6g01911 701 Pfam MA3 domain 420 529 IPR003891 -
Pste6g01911 701 Pfam MA3 domain 583 690 IPR003891 -
Pste6g01911 701 Pfam MA3 domain 121 232 IPR003891 -
Pste6g01911 701 Pfam MA3 domain 285 396 IPR003891 -
Pste6g01911 701 PANTHER PROGRAMMED CELL DEATH 4 5 695 IPR039778 GO:0045892
Pste6g01911 701 SUPERFAMILY ARM repeat 281 402 IPR016024 -
Pste6g01911 701 FunFam Programmed cell death protein 4 270 406 - -
Pste6g01911 701 FunFam programmed cell death protein 4 408 562 - -
Pste6g01911 701 ProSiteProfiles MI domain profile. 284 405 IPR003891 -
Pste6g01911 701 SUPERFAMILY ARM repeat 417 574 IPR016024 -
Pste6g01911 701 SUPERFAMILY ARM repeat 578 695 IPR016024 -
Pste6g01911 701 MobiDBLite consensus disorder prediction 15 36 - -
Pste6g01911 701 Gene3D - 569 696 - -
Pste6g01911 701 Gene3D - 271 404 - -
Pste6g01911 701 FunFam programmed cell death protein 4 112 264 - -
Pste6g01911 701 Gene3D - 408 562 - -
Pste6g01911 701 Gene3D - 113 261 - -
Pste6g01911 701 SMART ma3_7 419 530 IPR003891 -
Pste6g01911 701 SMART ma3_7 285 396 IPR003891 -
Pste6g01911 701 SMART ma3_7 121 232 IPR003891 -
Pste6g01911 701 SMART ma3_7 582 691 IPR003891 -
Pste6g01911 701 SUPERFAMILY ARM repeat 118 278 IPR016024 -
Pste6g01911 701 ProSiteProfiles MI domain profile. 581 700 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01911 Pste-Chr6 8832646 8837147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01911 585 681 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 7.05e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01911 6 8832646 8837147 Pste6g01911 6 8832646 8837147 ECH