Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01909 atggaaggctctgaatctgattctgcggcactttccaactccaatggcgaagaggcccaattggtggcaccttcttcccccgttgctcatcatgaaccgtcagatctcaatcacgcggcggaggaagaaccacttgctggggagcttcagagcaagttggatttgaaggttggggatgagagtgaggagaaagtttcggacttgaacgatgggggaggtgtttgtgatgaagacactgataagggtgatggagagtgtactggttgggagaccaatagttggaatggggaagtgggtgttgatgttgatgttccttttgatgttgatggtgatggtgatatagtagagaaaaaggaagagcaaaatagtggtgtagctcgccactacccattgaggcctgaagctgaggactgtgcattttatatgaaaactgggaattgcaagtttggctttaattgcaaatttaatcaccccattaggaggaaaactcaggcggttaaagagaaggcagtaggagaaaaagaagaaaccacagaaagatctggtgcgacagaatgcaagtattatcaaagatctgggggttgtaagtttgggaaatcttgtaaatataaccacacaagaggaaaaagttcaacagcttcagtgcaagttttagaacttaactttctgggcctgcctattcgtccgggggagagagaatgcccctattacatgcgcactggctcttgtaagtttggagcaaactgcaagttcaatcatcctgaccctacagctgttggaggatgtgatcctccttcggggtatggtaatggagggtctttttcattgcaaggtgtgtcacaaccatctcaaccctcatggtcttctccaagaacattaaatgaatcgtctccttttgtgccaatgatgctttcacctactcaaggaatttctactcaaagtactgattggaatggatatcaggcatcggtctatctacctgagaggagcatgcatccaccttctacatttgtcataaacaacccagcaattgatgcaaatgcttacatgcaccatcaaaagcagatacctgttgaagagtttccagaaaggccgggtgaacctgaatgcagctacttcctgaaaaccggggattgcaagtttaaatctaactgtaaatttcaccatccaaagaatcggggtgcaagattacctccatgcaatctcagtgacaagggtctgcctttgagacctgaccaaagtgtctgttcacattacagtcgatatggaatttgcaaatttggaccagcttgtaagtttgaccacccaataaacttgcagcccttaatcatgcctggacttggtcaacaatcctacccaaactctgctagtgttgaggtggctgggataggtggaagtgcaggtgcaactgatgcaacaattcagcaatctgtgtaa 1437 0.0 MEGSESDSAALSNSNGEEAQLVAPSSPVAHHEPSDLNHAAEEEPLAGELQSKLDLKVGDESEEKVSDLNDGGGVCDEDTDKGDGECTGWETNSWNGEVGVDVDVPFDVDGDGDIVEKKEEQNSGVARHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAVKEKAVGEKEETTERSGATECKYYQRSGGCKFGKSCKYNHTRGKSSTASVQVLELNFLGLPIRPGERECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPPSGYGNGGSFSLQGVSQPSQPSWSSPRTLNESSPFVPMMLSPTQGISTQSTDWNGYQASVYLPERSMHPPSTFVINNPAIDANAYMHHQKQIPVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRGARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLIMPGLGQQSYPNSASVEVAGIGGSAGATDATIQQSV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01909 478 MobiDBLite consensus disorder prediction 1 101 - -
Pste6g01909 478 ProSiteProfiles Zinc finger C3H1-type profile. 180 208 IPR000571 GO:0046872
Pste6g01909 478 Gene3D - 95 170 - -
Pste6g01909 478 Gene3D - 330 397 - -
Pste6g01909 478 ProSiteProfiles Zinc finger C3H1-type profile. 410 438 IPR000571 GO:0046872
Pste6g01909 478 SUPERFAMILY CCCH zinc finger 131 160 IPR036855 GO:0046872
Pste6g01909 478 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Pste6g01909 478 MobiDBLite consensus disorder prediction 34 85 - -
Pste6g01909 478 SUPERFAMILY CCCH zinc finger 231 255 IPR036855 GO:0046872
Pste6g01909 478 PANTHER PROTEIN PHOSPHATASE RELATED 12 449 - -
Pste6g01909 478 MobiDBLite consensus disorder prediction 1 21 - -
Pste6g01909 478 SUPERFAMILY CCCH zinc finger 408 436 IPR036855 GO:0046872
Pste6g01909 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 412 436 IPR000571 GO:0046872
Pste6g01909 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 205 IPR000571 GO:0046872
Pste6g01909 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 254 IPR000571 GO:0046872
Pste6g01909 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 158 IPR000571 GO:0046872
Pste6g01909 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 366 391 IPR000571 GO:0046872
Pste6g01909 478 ProSiteProfiles Zinc finger C3H1-type profile. 364 392 IPR000571 GO:0046872
Pste6g01909 478 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Pste6g01909 478 SMART c3hfinal6 364 391 IPR000571 GO:0046872
Pste6g01909 478 SMART c3hfinal6 228 255 IPR000571 GO:0046872
Pste6g01909 478 SMART c3hfinal6 410 437 IPR000571 GO:0046872
Pste6g01909 478 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Pste6g01909 478 Gene3D - 409 455 - -
Pste6g01909 478 Gene3D - 174 262 - -
Pste6g01909 478 SUPERFAMILY CCCH zinc finger 369 392 IPR036855 GO:0046872
Pste6g01909 478 ProSiteProfiles Zinc finger C3H1-type profile. 228 256 IPR000571 GO:0046872
Pste6g01909 478 MobiDBLite consensus disorder prediction 272 294 - -
Pste6g01909 478 SUPERFAMILY CCCH zinc finger 184 208 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01909 Pste-Chr6 8825657 8829387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01909 360 461 C2H2 Transcription Factor Family AT3G02830 49.038 1.33e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste6g01909 zf-CCCH 7.7e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01909 6 8825657 8829387 Pste2g00475 2 4349378 4354490 ECH
Pste6g01909 6 8825657 8829387 Pste6g01909 6 8825657 8829387 ECH
Pste6g01909 6 8825657 8829387 Pste2g00475 2 4349378 4354490 PCT