Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01899 atgtttcgttaccaaatgcttcattcaccaccctctttcctagactccctcaaggcacttgaggctgacatccaccatgccaatgacttggcagcttctattcctaggaagggcaggacttgccttcaaatgaagttagtttacaacagactggcaccagtttttctgtttttatttcaatggatggattactcatgctcgtgtctaccttctagtcatttgaatcttttccgtgtagttgtgtacaaggtccacaccaatggaaagtcagatatctattctggtggaaggaaagcaaccataagggagttctacagtgttatattaccttcactccagcgcctttatgaagatttcgtagaagctaacacttctgaagaaaatagccacaacattgagattattagcagcagcagtaaaaaggataagatgaaggcttcagatttggaattagagagagagcatgagtgtggcatttgcttagagtcttgcaccaaaatggttttgcctaattgctgccatgctatgtgtataaattgttacaatgactggaacacaaggtcagaatcttgtccattttgccggggaagtttgaagagagttaagtcaggggatttgtgggttctaacatgtagtagagatgtcactgatatgcacaccatatgcacggaagatatgttgcgcctctatatctttgtaaacaaccttcccgaatatacccctgatgctcttttccttatgtactatgactacttattttaa 762 0.0 MFRYQMLHSPPSFLDSLKALEADIHHANDLAASIPRKGRTCLQMKLVYNRLAPVFLFLFQWMDYSCSCLPSSHLNLFRVVVYKVHTNGKSDIYSGGRKATIREFYSVILPSLQRLYEDFVEANTSEENSHNIEIISSSSKKDKMKASDLELEREHECGICLESCTKMVLPNCCHAMCINCYNDWNTRSESCPFCRGSLKRVKSGDLWVLTCSRDVTDMHTICTEDMLRLYIFVNNLPEYTPDALFLMYYDYLF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01899 253 SMART ring_2 157 194 IPR001841 -
Pste6g01899 253 Pfam Ring finger domain 156 195 IPR001841 -
Pste6g01899 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Pste6g01899 253 FunFam RING/U-box superfamily protein 138 204 - -
Pste6g01899 253 SUPERFAMILY RING/U-box 144 200 - -
Pste6g01899 253 PANTHER RING FINGER PROTEIN 41, 151 12 251 - -
Pste6g01899 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 205 IPR013083 -
Pste6g01899 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01899 Pste-Chr6 8769712 8774245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01899 140 198 C3H Transcription Factor Family AT1G04360 31.746 3.07e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01899 6 8769712 8774245 Pste6g01899 6 8769712 8774245 ECH