Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01867 atggcaacccgcgtctttcttatcccagctgcgcggcgccttctcgttaaaaatgtcctcttcatgtcgtcattttctgctcgcacgctcgaagcgagcccgctatcatgttccctggggcgctcccaagaagaagagtgccgatatgtgagggtttgggcctggtgggacttcaaaagctgccacttacccactggtttcgacgcttccaaagttgcccctaccattatggaggctgtgagagccaacggaatcaaaggccctctcaacatcaccgccgttggcgacgttcaactcctctcccgtaggcaccaggaagcactcgcctatactggcgttcgcttctcccatttctccaacgaagtaaagagcagtttcgatattcttgttgacttaatgtattgggtttcgcaaaaccctccacccgcccatgtattttttatatctggtgataaagactttgcgggaatcttgcataagttgagaatgagtaattacaatatcctgcttgctacgccagagagggctcctactgttctcgaaagtgccgcaactatcgcctggcaatggtatcccctgcttaagggggacgatattgctggaaagtgtgtcaaccatcctcctgatgggccctactgttcttggtatggaagctacaaaccgtctccccttgaaaacccggttgtggcgcagcaatctccgtccactgtcgaggtctatcagccttcctccgcttccgttccccagtctcttgtgaaacaggttaggcatatactgagtttgcacccagaagggatagacatcagtgatcttcgtgttcagttgttaaaattaaaatctgatttgcattttgaaaaaagtttctatggacataagaagttttcccgatttctgttgtcgttgccatttgtacaacttcgctccccttctgatggttattttactgtacatttggctcctttggagtctccagaaccttgtaagaaaagtagttctgtggcatcaagaaagaccaacggtaagaatgaggagaaaggatgtccagcaaccccagacgataaaagtaaggttagcgatgcagataagaaattctcaattacctccatccttgaccacaatttaaaaccagggccttcacaagggagacccaatgagaaatatgtggatggtaaatcatcatctcctgcattggttgaaaagcatgtctgtcagtccacgaatgagttgcagccaaaatcttcagtcgtctgcgacaaagttgtggatgtggcttcagatattcaaatgccacccaaggacaacaacgattccaaagtgaagatggattccttaaaactaacttctcaaaatttatttgataatgatgatattgttaggtctgaagatgcaagtcataaaagtatggaaaaactcacaacttctgagaatcactctgctggaattgatcaatcaaagatggaggacaatgttattgcaaactatgaatctggaaattttgattcagagaacaaatatgaagattcaactagaatggaggttgatgaagttttttgcagcccatcttcttcacctgttgatgcctctccagttgtcccaagatctagtgaaagtgaaaaaactaataacagaagttcaacattgttacgctggattagaaattggtggccatttcggaaaagcaatgcaaggtatgatgattataagaacaaggtggtttatcatgttgaggattccaagttatctgaacttgacgagactgttagacaatttgaagagcccaagatacctgggctggatcagaatgttggccatgtggaggatcccaagttatctgaacttgatgagaatgttagtcctgttaaggattccaagttatctgaactggaccagactgctagtctatttgaagagaccaagttatcagaagtagatcagaatgttagtcattctgaaaagcttgagttattttctaatgcttccttttggaatgatatggaatcttttgtttttgcgtccaagggatcactgcttttctccctgtctagaagcagggaggatttggtgcatagaatacaaaatggtggacccgtggttcttaaatcactacccaaaaaagacatccttgtattggtggagttgttaatagcagagaaaaaatggttggaggaaatcccctcccaaacatttccttttaaactaactcgacttgttcagaagaattcattggtggaccaatcccatggtgcaaatggtttgagatctctctttctaggtagtagaacatcacagacaaacttgcaaaaatcatcagaacatgatgtggagaaacacaatcagaatatttctcatactcgagtttcagtgtcaaccactgaaacaaaatttactgagagatctagaaatgatatattagaagactgtcagaaacttgtgagtgagatactcaggggacatccggaagggtataatattggttctttccgaagactatttgttgataggtatggctatcatcttgatatacagaagcttggttatcaaaagttggcagccttgctacagataatgcctggggttaaattagagtccacatatattttcccttctgttcctgctgtctgtgattctgacttggaaacttctatcctgaaaactccagcaaccactgatattcatgcagcctccaactcagatagtgaattatgtgagacggccctgaaagatgataagatggaatccccatgggaggagttaggtcccatttctatcaacaattccaacaataatgatttggaattaaattcaagtcagaaagttatagaactggatacatcaaagccaaagtatcttgattatgaacctgttgtatcagatgatgaattttctgcatctgacggagatgactctcgtttaactcaatcagaagagcaaagaaaacctacatgtaatgaacaagacagttctttttggaaagtaatggatttgtggcacagaagcaaggaagaagaggatagtggcaatatgtcagacaatgttgacagcttgagcgcttctctggtcgatattttagattcatccactaagtcgaccaaggataccctttccaaaattaagtcatcaaattacagagataataatatcgagaagaaatcagacaatgctgacagcttggaagctcccctggctgatgtttttaattcttcttctgagtcaaccaggggtaaaagtccttcatcaaattacagagagaagcaaagatctcggaagaactattccttcgttgctgatccagtcttacctaataaggataagctggttgatgacttaaagaaggcagatgattcaaagatgcaaaactga 3360 0.0 MATRVFLIPAARRLLVKNVLFMSSFSARTLEASPLSCSLGRSQEEECRYVRVWAWWDFKSCHLPTGFDASKVAPTIMEAVRANGIKGPLNITAVGDVQLLSRRHQEALAYTGVRFSHFSNEVKSSFDILVDLMYWVSQNPPPAHVFFISGDKDFAGILHKLRMSNYNILLATPERAPTVLESAATIAWQWYPLLKGDDIAGKCVNHPPDGPYCSWYGSYKPSPLENPVVAQQSPSTVEVYQPSSASVPQSLVKQVRHILSLHPEGIDISDLRVQLLKLKSDLHFEKSFYGHKKFSRFLLSLPFVQLRSPSDGYFTVHLAPLESPEPCKKSSSVASRKTNGKNEEKGCPATPDDKSKVSDADKKFSITSILDHNLKPGPSQGRPNEKYVDGKSSSPALVEKHVCQSTNELQPKSSVVCDKVVDVASDIQMPPKDNNDSKVKMDSLKLTSQNLFDNDDIVRSEDASHKSMEKLTTSENHSAGIDQSKMEDNVIANYESGNFDSENKYEDSTRMEVDEVFCSPSSSPVDASPVVPRSSESEKTNNRSSTLLRWIRNWWPFRKSNARYDDYKNKVVYHVEDSKLSELDETVRQFEEPKIPGLDQNVGHVEDPKLSELDENVSPVKDSKLSELDQTASLFEETKLSEVDQNVSHSEKLELFSNASFWNDMESFVFASKGSLLFSLSRSREDLVHRIQNGGPVVLKSLPKKDILVLVELLIAEKKWLEEIPSQTFPFKLTRLVQKNSLVDQSHGANGLRSLFLGSRTSQTNLQKSSEHDVEKHNQNISHTRVSVSTTETKFTERSRNDILEDCQKLVSEILRGHPEGYNIGSFRRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKLESTYIFPSVPAVCDSDLETSILKTPATTDIHAASNSDSELCETALKDDKMESPWEELGPISINNSNNNDLELNSSQKVIELDTSKPKYLDYEPVVSDDEFSASDGDDSRLTQSEEQRKPTCNEQDSSFWKVMDLWHRSKEEEDSGNMSDNVDSLSASLVDILDSSTKSTKDTLSKIKSSNYRDNNIEKKSDNADSLEAPLADVFNSSSESTRGKSPSSNYREKQRSRKNYSFVADPVLPNKDKLVDDLKKADDSKMQN 1119
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01867 1119 Pfam OST-HTH/LOTUS domain 804 862 IPR025605 -
Pste6g01867 1119 Pfam OST-HTH/LOTUS domain 249 312 IPR025605 -
Pste6g01867 1119 ProSiteProfiles OST-type HTH domain profile. 247 320 IPR025605 -
Pste6g01867 1119 Gene3D - 798 865 IPR041966 -
Pste6g01867 1119 MobiDBLite consensus disorder prediction 338 368 - -
Pste6g01867 1119 MobiDBLite consensus disorder prediction 323 393 - -
Pste6g01867 1119 MobiDBLite consensus disorder prediction 521 541 - -
Pste6g01867 1119 MobiDBLite consensus disorder prediction 518 541 - -
Pste6g01867 1119 CDD LOTUS 804 859 - -
Pste6g01867 1119 MobiDBLite consensus disorder prediction 1045 1096 - -
Pste6g01867 1119 CDD PIN_limkain_b1_N_like 51 173 - -
Pste6g01867 1119 ProSiteProfiles OST-type HTH domain profile. 803 877 IPR025605 -
Pste6g01867 1119 MobiDBLite consensus disorder prediction 951 984 - -
Pste6g01867 1119 MobiDBLite consensus disorder prediction 1062 1076 - -
Pste6g01867 1119 Gene3D - 244 323 IPR041966 -
Pste6g01867 1119 PANTHER LIMKAIN B LKAP 36 814 IPR024768 GO:0005777|GO:0010468
Pste6g01867 1119 MobiDBLite consensus disorder prediction 963 982 - -
Pste6g01867 1119 Pfam NYN domain 51 184 IPR021139 GO:0004540
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste6g01867 Pste-Chr6 8623873 8628499 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01867 46 196 C2H2 Transcription Factor Family AT5G61190 42.581 7.00e-33 136