Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01858 CTAAGACGAACAATCCAAGCTTTGTTCTGAATTCAAGTATTTATTGGTTTTCATTCATTGTATATGGTTGTTTTCAGTGTTGTTTACAAGATATTTTCCTTGCAAGGAAGGAACTCTTTTTGGATGTGAGGCAGCCAACATGCCATTTTTGTTACAAAAGTATTTAATAGCTTCAATACATCTATGTATGTTTATGTCACTCTTTGAAAATTTTAGAGAAAAAAGGGAAATTTGGCACTCCATCTGTATTATCAAGACAATAATGGAGTCCATGATTAAGTATTTCTCTAAAAACAAAGACATGACTACTGCAAATGGTGGGACTGGAACTGAGGAGCACAAAAGGAAAACTAATGATCCTTTTCTTAAACCAGCGGGACACCAAAACATGCCAAGATCACCTAGATTGTGCACATCTATTCGGAAAGAATGGCCAGAGAGTTTACCAAATGACTATGTGAATGGCAGTGAGGGTAATGGTTTGAATAGATATTCTACTTCCCTAGCTGGATCTGGACCTCGTAGTACTAGTTTTTGTTCCACGATAGATTCTGAATACATTGTTCAAGAGTTGCCTGTTAGGAATTATAAGAATCAGAATATAGACTTAGTTAGCCACCCACATAATTCAAGACAGGCAAGGAATCAATTGACTACTGAGTCCAAGTATAATAGCTTGAATAGAGAAGTTGTACCTAAGGTTGAAGAACAGATGCCACTCAGATTAAGCAAAGGACTTAAGGGAATTGAATCTGAATTTTTGGCCATTAAGTCTCTGCCTGGCAAGAGTGTAAATCATGAGTCTCTGAAAGTCTCAGCAGATATAAGCAATATGGGCAAGACTATCATCTCAAACAATGCACATCTTATTAGCAGTGTAACTCAGAGTACTTCATCTGCATATAATTATCCTCAATTGATTGTAAAGCAAACAAGGAAGGGAAAGGAAGTTATTTGTGAAGATTCGGACAAAGTCTTCAGTATTGGAGGAGCAGTTAAGAGCAATGAAGATGAGAAACCTGCTTTTGCAGCCAAGTTTCAATCTGATTCACTGATGAGATCAAATGTTGATAATAAGAAGCCTTTATTGGAAGGAACTATCATGTCCGGTAGCAATGGACTCAACTTAAGAGAGTGGTTGAAGTCTGAAGGACATAAAATGAATAAATCAGGAAGGCTTCATATATTTAAGCAGGTGTTGAAATTGGTTGTTTTTGAACACTCTCAAGGAATTGTCTTGCTAGACTTTCGACCGTCTAGTTTTACTTTATTGCCTTCAAGTAAAATTAAGTACATTGGTTCATATGGTCAACAAGAGTTAGATGATGAAGTCATGACATGTAATGTGACTAGAAAAAGACCTCTGGAACTGAATAACAGTGCTTGCCAGAGTTTAAGTACAAAGCAGCAAAAGCTCAGTGAGGAGACAGACTCTTCTAGGCAGCAACATCACTATACTAGTATTCATGACTGTTGGACGACTGTAAATCAAATTGACTCCGACATAAACAGACCTGTGGAATCAAGGAGTAAAGAAAGTCTATGCCAAAATAATTCTACTTGTACTGAAGAAAAACAGTTTATGTCTTCAAACATTAAGTTAGAAGAGAAGTGGTATTGTAGTCCAGAAATGCTCCACGACGGAGTTTGCACGTTGTCATCAAATATTTATAGCCTTGGAGTTTTTCTTTTTGAGTTGCTGTGCCCTATTGAGTCATGGGAGGAGCATTCAAGTGCAATGTTGGATTTGTGTCATAGAATCTTACCTCCTAAATTTCTAGCAGAAAATCCAACGGAAGCTGGCTTTTGTCTTTGGCTTCTGCATCCTGAACCATCTTCTCGCCCCAATGGCAGGATGATTTTAGAATCTGAACGTATACGTGAATCAAAGGAATCAAATTCTGTAGATGATGATGGAATATCTGATGATGAGGGTGAAACAGAGCAACTACTACATTTTCTAACTTCACTCAAAGAAGAAAAGATAAAACAGGCAGCCAAGTTGGAAGAAGAGCTAAATTTCTTGAATGAAGATATTCAGGAGGTAGAAAGAAGTTATTCATTTGGGACAGGTTCGGTATTTCCTTCGGCACAAATGAGCAGTTCTGAAGTGAGGCAGAACAGTTTACATTTTGAAGATTCTTCTAGTTCAGATATTAGTAGATCCATTCAAAGGTCATTCGGTGATGAAGGAAGATTTATGAGTAACATAAATCAGCTAGAGAATTCTTACTTTTCCATGAGATTTCGAGTCCTGCCAAAAGAGACTTCAACTCTTTCAAGCAATGATAGAAATGTGATGGAAAGTAGAGGCGGGTTGCCTCGAGTAGAGCATGTTAATAAGGAGCCTAGAAGAATTCAGAGTTCTGTTGGTTGTCTAGGATCCTTTTTTGAAGGTTTATGCAAATTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCAGATTAAGAAATAGAGATCTGCTCAGTTCTGCCAATGTAATGTGCGCTTTAAGTTTTAACCGTGATGAGGATTACATTGCAGCAGGAGGAGTTTCAAAGAAAATCAAGATTTTTGACCTCAACGCTATTACCAGTGATTCTATTGACATCCAGTATCCAGTAGTTGAGATGTCAAACAAATCAAAGCTTAGTTGTGTGTGCTGGAACACTTACATAAAAAATCATCTAGCGTCTACTGACTATGATGGTGTGGTTCAGATGTGGGACGCAGATACTGGTCAGCGATTGTCTCAATACATTGAGCACCAAAAGAGAGCATGGTCGGTTCACTTTTCTCTGTCAGATCCAAAAATGTTTGCTAGTGGAAGTGATGATTGTTCTAGAAATTCTATGGGAACCATCTGGAACCCTGCCAATATATGCTGTGTTCAGTTCTCTTCCTACTCAACAAATCTTCTATTTTTTGGATCAGCTGATTACAAGGTTTACGGCTATGATCTTCGTCACACTAGAATCCCTTGGTGCACATTAGCTGGTCATGGAAAAGCTGTTAGCTATGTAAAATTTATAGATGCTGAATCAGTAGTCTCCGCTTCCACTGACAACTCTTTGAAGCTTTGGAACCTGAAGAAAACCTGCTCTTCTGGTTTGTCATCGGATGCTTGTGTCTTGACCTTCAAAGGTCATAGTAATGAAAAGAATTTCGTGGGATTATCAGTTTTGGATGGATACATTGCTTGTGGTTCAGAATCTAATGAGGTGTACTGTTATCACAAATCATTGCCAGTGCCAATTGCTACACATAAATTTGAGTCGATTGATCCAATTTCTGGTCAGCTAAATAGTGGTGATAATAATGGACAGTTTGTTTCTAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTTGCCGCCAACTCAGTTGGAATTGTGAAACTATTGCAGATGGGACAGATTCTGGGAGGAGTGAGAGTGTGTCTGAAACACAATGTACGGTTTGAGAATCTCCACATTAACACTGTTCCTTTTCGTTGCACCAATCACTTCCACACGGATCCTATTCCTCCCCCAACCCACCACCTCCGCCAACCTCCTCCTCCTCCCCGCCGCAGCCGCCGCCGCCGCCATCATCGTCCTCGCCGTCTCCGCCTTTGCCTTTCTCCACTGCCTCCGCAGACGCAAGACCTTCTCCGCCCATGCCACCGCCGCCTTCCAAAAACTCAGAATCTCTTCCGAGTCGCCGGAGCTTCACCCGCTGCTGGCCTCGCCGGAGGACCGACAACAACCACTCTGCTCGCCCAGAGGATTTTAGGATCTGAACCTATACCTGAATCAAAAGAAGCAAATTCTGAAGATGATGTTGGAATATCTGATAATGAGGCGGAAACAGAGATTTTACTACATTTTCTAATTTCACTCAAAGAAGAAAAAAAGAAACAAGCAGCCAAGTTAGAAGAAGTGCTAAATTTCCTGAATGAAGATATTAAGGAGGTAGAAAGAACTTATTCATTTGGGACAGATTCGGTATTTGCTTTCGCACAAACGAACAATCCTGAAGTGAGAGGAAACAGTTCACATTCTCAAGATTCTTCCAGTTCAGACATTAGTAGATCAATTCAAAGGTCATTTGTTGATGAAGAAAGATTTACGAGTAATCTAAAACACCTAGAGAGTTCTTACTTAGAAGCGAGATCACGAGTCCTGCCAAAAGAGACTTCATCTGTTTCAAGCAATGATAAGAATGTGATGGAAAGTAAATGGAGGTTGCCTCATGTGGAGAATGCTAATAATGAGCCTAGAACAGTTCAGAGTTCCGTTGGTTGTTTAGCATCCTTCTGTGAAGGTTTATGCAAGTTTGCTCGTTATAGCAAGTTTGAAGAGTGTGGCAGATTAAGAAATAGTGATTCGTTTTGTTCTGCTAATTTAATATGTTCTTTAAGTTTTGACCATGATGAGGATTACATTGCAGTAGCAGGAGTTTCAAGGAAAATTAAGATTTTTGACTTCAATGTTATTTCAAGAGATTTTATTGCCATCCATGACCCAATAGTTGAGATGTCAAATGAATCCAAGCTTAGTTGTGTGTGCTGGAACACTAGCATAAAAAATCATCTGGCATCTGCTGATTATGGTGGCGTGGTTCAGGTTCCATTGATACTAATAATATATGGGATGTTGGCACTGGTCAGTCCTTATCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTATTCACTTTTCTTTGTCAGACCCTAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTATCAAACTGTGGAATATCAAAAAATTCTCTGGGAACCATCAGGAATCATGCTAATATATGCTGTGTTCAGTTCTCTCCTTCATCAACAAATCTTTTATTTGTTGGAGGAGCTGATCACAATATTTATGGCTATGATCTGCGTCATACTAGAATCCCTTGGTGCACATTAGCTGGTCATGGGAAATCTGTTAGCTACATAAAATTTATAGATGCTGAGGCTGTTGTCTCGGCTTCCACCGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAACCAGTTCTTCTGCTTTGTCATCTGATTCTTGTGTTTTAACCTTTAAAGGGCATACTAATAAAAAGAATTTCGTGGGACTATCTGCTTTGGATGGCTACATTGCATGTGGCTCAGAATCTAACGAGGTATTCAGTTATCACAAATCACTGCCAGTGCCTATGGCTACTCATAAATTTGATGCAACTGATCCCATTTCTGGTAATCCAAATAGTGGTGATAGTAATGGACAGTTTGTTTCTAGTGTCTGTTGGAGAAAGAAATCTAACATGCTTGTCGCGGCCAACTCAGTTGGAATTGTGAAACTATTGCAGATGGTC 5317 0.3948 MPFLLQKYLIASIHLCMFMSLFENFREKREIWHSICIIKTIMESMIKYFSKNKDMTTANGGTGTEEHKRKTNDPFLKPAGHQNMPRSPRLCTSIRKEWPESLPNDYVNGSEGNGLNRYSTSLAGSGPRSTSFCSTIDSEYIVQELPVRNYKNQNIDLVSHPHNSRQARNQLTTESKYNSLNREVVPKVEEQMPLRLSKGLKGIESEFLAIKSLPGKSVNHESLKVSADISNMGKTIISNNAHLISSVTQSTSSAYNYPQLIVKQTRKGKEVICEDSDKVFSIGGAVKSNEDEKPAFAAKFQSDSLMRSNVDNKKPLLEGTIMSGSNGLNLREWLKSEGHKMNKSGRLHIFKQVLKLVVFEHSQGIVLLDFRPSSFTLLPSSKIKYIGSYGQQELDDEVMTCNVTRKRPLELNNSACQSLSTKQQKLSEETDSSRQQHHYTSIHDCWTTVNQIDSDINRPVESRSKESLCQNNSTCTEEKQFMSSNIKLEEKWYCSPEMLHDGVCTLSSNIYSLGVFLFELLCPIESWEEHSSAMLDLCHRILPPKFLAENPTEAGFCLWLLHPEPSSRPNGRMILESERIRESKESNSVDDDGISDDEGETEQLLHFLTSLKEEKIKQAAKLEEELNFLNEDIQEVERSYSFGTGSVFPSAQMSSSEVRQNSLHFEDSSSSDISRSIQRSFGDEGRFMSNINQLENSYFSMRFRVLPKETSTLSSNDRNVMESRGGLPRVEHVNKEPRRIQSSVGCLGSFFEGLCKFARYSKFEECGRLRNRDLLSSANVMCALSFNRDEDYIAAGGVSKKIKIFDLNAITSDSIDIQYPVVEMSNKSKLSCVCWNTYIKNHLASTDYDGVVQMWDADTGQRLSQYIEHQKRAWSVHFSLSDPKMFASGSDDCSRNSMGTIWNPANICCVQFSSYSTNLLFFGSADYKVYGYDLRHTRIPWCTLAGHGKAVSYVKFIDAESVVSASTDNSLKLWNLKKTCSSGLSSDACVLTFKGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIATHKFESIDPISGQLNSGDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMGQILGGVRVCLKHNVRFENLHINTVPFRCTNHFHTDPIPPPTHHLRQPPPPPRRSRRRRHHRPRRLRLCLSPLPPQTQDLLRPCHRRLPKTQNLFRVAGASPAAGLAGGPTTTTLLAQRILGSEPIPESKEANSEDDVGISDNEAETEILLHFLISLKEEKKKQAAKLEEVLNFLNEDIKEVERTYSFGTDSVFAFAQTNNPEVRGNSSHSQDSSSSDISRSIQRSFVDEERFTSNLKHLESSYLEARSRVLPKETSSVSSNDKNVMESKWRLPHVENANNEPRTVQSSVGCLASFCEGLCKFARYSKFEECGRLRNSDSFCSANLICSLSFDHDEDYIAVAGVSRKIKIFDFNVISRDFIAIHDPIVEMSNESKLSCVCWNTSIKNHLASADYGGVVQVPLILIIYGMLALVSPYLNTWSTKRELGLFTFLCQTLKCLLVEVMTALSNCGISKNSLGTIRNHANICCVQFSPSSTNLLFVGGADHNIYGYDLRHTRIPWCTLAGHGKSVSYIKFIDAEAVVSASTDNSLKLWDLKKTSSSALSSDSCVLTFKGHTNKKNFVGLSALDGYIACGSESNEVFSYHKSLPVPMATHKFDATDPISGNPNSGDSNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV 1726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01858 1726 ProSiteProfiles Trp-Asp (WD) repeats profile. 1586 1626 IPR001680 GO:0005515
Pste6g01858 1726 MobiDBLite consensus disorder prediction 57 88 - -
Pste6g01858 1726 Gene3D - 1532 1726 IPR015943 GO:0005515
Pste6g01858 1726 Gene3D - 1379 1484 IPR015943 GO:0005515
Pste6g01858 1726 Gene3D - 750 1085 IPR015943 GO:0005515
Pste6g01858 1726 SMART WD40_4 771 806 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 1628 1667 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 937 975 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 986 1025 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 817 856 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 1579 1617 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 859 893 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 1536 1575 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 1391 1435 IPR001680 GO:0005515
Pste6g01858 1726 SMART WD40_4 894 933 IPR001680 GO:0005515
Pste6g01858 1726 ProSiteProfiles Trp-Asp (WD) repeats profile. 823 865 IPR001680 GO:0005515
Pste6g01858 1726 SMART serkin_6 280 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g01858 1726 MobiDBLite consensus disorder prediction 1119 1147 - -
Pste6g01858 1726 ProSiteProfiles Protein kinase domain profile. 171 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g01858 1726 Pfam WD domain, G-beta repeat 1539 1572 IPR001680 GO:0005515
Pste6g01858 1726 SUPERFAMILY WD40 repeat-like 1408 1721 IPR036322 GO:0005515
Pste6g01858 1726 Gene3D Transferase(Phosphotransferase) domain 1 326 591 - -
Pste6g01858 1726 ProSiteProfiles Trp-Asp (WD) repeats profile. 944 977 IPR001680 GO:0005515
Pste6g01858 1726 Coils Coil 1241 1268 - -
Pste6g01858 1726 MobiDBLite consensus disorder prediction 1284 1304 - -
Pste6g01858 1726 ProSitePatterns Trp-Asp (WD) repeats signature. 962 976 IPR019775 -
Pste6g01858 1726 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 944 977 - -
Pste6g01858 1726 Coils Coil 605 639 - -
Pste6g01858 1726 SUPERFAMILY Protein kinase-like (PK-like) 322 579 IPR011009 -
Pste6g01858 1726 MobiDBLite consensus disorder prediction 1132 1147 - -
Pste6g01858 1726 PANTHER PROTEIN SPA1-RELATED 2 1537 1726 IPR044630 GO:0009640
Pste6g01858 1726 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1586 1619 - -
Pste6g01858 1726 SUPERFAMILY WD40 repeat-like 782 1080 IPR036322 GO:0005515
Pste6g01858 1726 ProSitePatterns Trp-Asp (WD) repeats signature. 1604 1618 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01858 Pste-Chr6 8564835 8582274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01858 1538 1663 Miscellaneous Gene Families AT5G08390 29.688 6.07e-06 49.3