Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01841 atggccacttgctcttctctttctctgtgtcctcacactttgtgttgccgccaccgcccttaccctccacgtcattcccttacctgctctctctcctcttcttccctcccagatacagatggacctaaagtactgcgtaaaagatcaagaagaacagaaggtcctcgaaaaagcatggaagattctgttcaacgcaagatggaggaattttatgaagggcaggatgggccacccctcagagttcttcccattggtgggctgggtgaaattgggatgaattgtatgcttgttggaaactacgatcgctacatcctcatagacgcaggtgtcatgttcccagactatgatgaacttggagtccaaaagatcatacctgatacaacatttataagaaaatggagacacaaaattgaagcagttgttataactcatggtcatgaagaccacattggtgcattgccttgggtcatcccagcattagattctcatacgccaatttttgcatcatcctttacattggagcttataaggaaacgtttgaaggatcatggtattgttgttccatcccgactgaaagtttttagaacgagaaagaagtttatggcgggcccatttgagatagaacctatcacagtgactcattctattcctgattgctgtgggctagtgctccgctgttctgatggtaccattcttcacactggggattggaagattgatgaaacacctttagatggcaaagtttttgatcgggaagctctagaggaactttctaaagaaggagtcacattgttggtatcagagcaagttcgattctgctctttatcgtctagagtcgcacagttggctgtccgccaccgtttgccgccgtctccggcgactttttctccagtgagcacagatctagcgcgtgagatccacgcgccggcgaaacggtctccgttcgccgtcgttccggtgccgtctgactcgccggagcctcctgaagccattgctgacctgcgtgcttgggttgattctggaactcggttccttggtcaaggacaccatgagcatctagaaaagtcagtggagcctaagatattgaggaacctcagagctttcaaaaaaacttgttactcgttttggaagaaagctcaagatatctactctaatgatatccaacgcttgtttgattgtgttcaaaagctagcctccttaaaacaaaatgattcagatatggtatcatatgtttccgaagctcaagccgctgcagaagaattgaagcttttcttagaagctgattctatagaagaaataaggaaacgacttgataacctctatatggttatgattcttcgtggtatgaacccaacatttaaccacattcgtgatcaagttctgactggtcaagatatttcttccatggagagcttaactactcgtctcctccgtgttcctaccttgagcaatgagggtacctcccttgaaagtaatatggagtcctctgttatgatatcttcaagaggaagaggagaacgtggaaacagaggtcgtggtggacgaggtaatcgtcctcaatgcactcattgcaaaaggatgggtcatactcacgagacatgttactctctgcatggttttccagacaagtctgctcatgtatcaagccttgctggaccttcttctggacctaatgtatcaacgacctgcatttctcaacctgtggaaggtcaaaacccatggattgttggctctggtgcttcagaccatatctctggcctcgataaattgtcagttaagtcgatcaagtgtgttttcttggaatactcccgccttaaaaaaggatacaaatgttattctcctcataacaagaagtattacatgtctgcaaatgttaccttctttgaagattctcccttctactcatcctccacacctgactccatttccatccaagaggccttgccctctccctcttcgagtccagatattgtcatttctccaggcatgtctcatcaacctgaccactctaatattattccaatgcctatcttatctgaaactgatcattttcccacgactcctcctcatggcatggcacctgaagctaatgactctcgtggttcatgtccatctctgtctgcttcttgtacaacggctcctaatactcctcccatggccgatgacaacttatgttggcctgttgcccttcgaaaagccatgattgatgaaatgcaggcccttgatcacaatagaacatgggaattggttcatcttcctcctgggaagaaagctgttggttgtagatggatctatgctattaaagttggtccaaatggtgaaattgaacgccttaaagctcgtttggtagccaaaggttacactcaaatatacggacttggttatggagacactttctccctagtggccaagatcactactattcgtcttcttcttgccatggcagctattcgccattggcccccgtatcagatggacgttaaaaatgcattcctacatggtgagttagatgaggaaatttacatggagcaacctccaggaaatgatgaagtcacaatatctcaactaaaggaacacttatgcaatcactttcgaacaaaagatcttggtcatctgaaatattttctgggagtagaagtagctcaatccaaagaaggcattgtagtttcccagaggaagtatgccttggatcttctgaacgaaacaaaaatgtctgattgtaagccagtcaatagtcctatggacccatacaagaaattagtagctgatatgggagacttatactcagatccagaaaggtacataaaaaaggctccaggtcagggtctgttgttcgaagataaaggaaatagccaaattgttggatactgtgatgctgattgggctgaatccgatacagatagacgctctactactgagtattgtgtgtaccttgatggtaatcttatctcatggaagagaaggacactcagtgaatctgttgtggcagaggcattattgaggaatgtttcagctgctaaaggacgggttataacaacccagtttgcatcaaatatacatcgtcttggaagtgtgaaagctgctgctgatttaactggtagaaaattggtatttgttggcatgtcgttaagaacatatttagatgctgcttggaaggatggaacggctccaattgatccatctactttggtgaaagtggaggatattgatgcttatgcaccaaaggatttgcttattgttacaactggatctcaagcagaaccacgtgctgccttaaatcttgcatcttatggaaatagtcattctttcaagctgacaaaggaagatctgattttatattcggctaaggttatccctggtaatgagtctcgtgttatggaaatgttaaaccgcatatcagagattggatcaactataattatggggaagaatgaatgtctgcacacatctggtcatgggtatcgtggagaattggaggaagtacttagaattgtgaagccacagcattttctacctatacatggagaactcgtgttcttgaaggagcatgaattacttggaaaatcaactggcattcggcacacaactgttattaagaatggagagatgcttggtgtttctcatttgagaaatagaagagtcctctctaatggtttcacttcacttggaaaagagaatttgcagttgatgtatagtgatggtgagaaagcatttggtacatcaagtgaactctttgttgatgaaagattgagaattgcattagatggcatcatagtggttagtatggaagtatttcgtcctcaaaatttagacagtccacttgagaacacgttgaaaggaaaaataagaatcaccaccagatgcctgtggcttgacaaggggaagctgttggatgcgctgcataaagctgctcatgctgctcttgctagctgccctgtaagctgtcctctagctcatatggaaagaattgtgtctgaggtgttgagaaaaatggtgaggaagtacagtggcaaacggcccgaagttattgccattgccacagaaaatcctgcagctgttcttgctaacgaggtaaacacaaggttgtctggaaaattccatgtggatggaatatcaacattgagaaaagtggtggatggacataggaaagaaaatcagaaaaccaaaatgccaataagagatcgtattgtaggtggtctactacctaccgaagacgtcactatctctagtggatctgagaattatttgtcttatacggaggattcagatgagttttttaaaccatttgttgaatcctctccagttatgaattcaattaaagctagcaatggttatgttccacgaaaggagaagtccatcctgttgaaggatgatggttctgaagacactgaagaatgcaattttgtagatgcatcaaattctgaacctaaaccatcaaaatcagcaaagagaaataaatggaaacatgatgaaattaagatgctgattggtatgcgtgtggaactaaatgacagatttcaagttgtgaagggaaggatggccctctgggaagaaatatcgcagaatttgttggctaatgggatcagtagaagtcctgggcagtgtaaatgtctgtggacatctttgttacagaaataccaggaggtgaagaatggcaagaaaaaatggccgtatcttgaggacatggaaaggattctatctgataacgaggcactagcaacaaaatga 4728 0.0 MATCSSLSLCPHTLCCRHRPYPPRHSLTCSLSSSSLPDTDGPKVLRKRSRRTEGPRKSMEDSVQRKMEEFYEGQDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTLELIRKRLKDHGIVVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLLVSEQVRFCSLSSRVAQLAVRHRLPPSPATFSPVSTDLAREIHAPAKRSPFAVVPVPSDSPEPPEAIADLRAWVDSGTRFLGQGHHEHLEKSVEPKILRNLRAFKKTCYSFWKKAQDIYSNDIQRLFDCVQKLASLKQNDSDMVSYVSEAQAAAEELKLFLEADSIEEIRKRLDNLYMVMILRGMNPTFNHIRDQVLTGQDISSMESLTTRLLRVPTLSNEGTSLESNMESSVMISSRGRGERGNRGRGGRGNRPQCTHCKRMGHTHETCYSLHGFPDKSAHVSSLAGPSSGPNVSTTCISQPVEGQNPWIVGSGASDHISGLDKLSVKSIKCVFLEYSRLKKGYKCYSPHNKKYYMSANVTFFEDSPFYSSSTPDSISIQEALPSPSSSPDIVISPGMSHQPDHSNIIPMPILSETDHFPTTPPHGMAPEANDSRGSCPSLSASCTTAPNTPPMADDNLCWPVALRKAMIDEMQALDHNRTWELVHLPPGKKAVGCRWIYAIKVGPNGEIERLKARLVAKGYTQIYGLGYGDTFSLVAKITTIRLLLAMAAIRHWPPYQMDVKNAFLHGELDEEIYMEQPPGNDEVTISQLKEHLCNHFRTKDLGHLKYFLGVEVAQSKEGIVVSQRKYALDLLNETKMSDCKPVNSPMDPYKKLVADMGDLYSDPERYIKKAPGQGLLFEDKGNSQIVGYCDADWAESDTDRRSTTEYCVYLDGNLISWKRRTLSESVVAEALLRNVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGTAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGNSHSFKLTKEDLILYSAKVIPGNESRVMEMLNRISEIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELVFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGKENLQLMYSDGEKAFGTSSELFVDERLRIALDGIIVVSMEVFRPQNLDSPLENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALASCPVSCPLAHMERIVSEVLRKMVRKYSGKRPEVIAIATENPAAVLANEVNTRLSGKFHVDGISTLRKVVDGHRKENQKTKMPIRDRIVGGLLPTEDVTISSGSENYLSYTEDSDEFFKPFVESSPVMNSIKASNGYVPRKEKSILLKDDGSEDTEECNFVDASNSEPKPSKSAKRNKWKHDEIKMLIGMRVELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKCLWTSLLQKYQEVKNGKKKWPYLEDMERILSDNEALATK 1575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01841 1575 ProSiteProfiles Myb-like domain profile. 1479 1543 IPR001005 -
Pste6g01841 1575 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 1146 1192 IPR011108 -
Pste6g01841 1575 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 744 848 IPR013103 -
Pste6g01841 1575 Gene3D - 64 280 IPR036866 -
Pste6g01841 1575 PANTHER RIBONUCLEASE J 984 1575 - -
Pste6g01841 1575 CDD GT1 1485 1550 - -
Pste6g01841 1575 Gene3D - 991 1141 IPR042173 -
Pste6g01841 1575 MobiDBLite consensus disorder prediction 487 523 - -
Pste6g01841 1575 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 268 IPR036866 -
Pste6g01841 1575 SUPERFAMILY DNA/RNA polymerases 743 988 IPR043502 -
Pste6g01841 1575 CDD RNaseJ_MBL-fold 82 268 - -
Pste6g01841 1575 MobiDBLite consensus disorder prediction 1465 1485 - -
Pste6g01841 1575 SMART Lactamase_B_5a 91 286 IPR001279 -
Pste6g01841 1575 Pfam Myb/SANT-like DNA-binding domain 1484 1565 IPR044822 -
Pste6g01841 1575 SUPERFAMILY Metallo-hydrolase/oxidoreductase 983 1204 IPR036866 -
Pste6g01841 1575 MobiDBLite consensus disorder prediction 29 63 - -
Pste6g01841 1575 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Pste6g01841 1575 Gene3D - 1487 1548 - -
Pste6g01841 1575 MobiDBLite consensus disorder prediction 41 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01841 Pste-Chr6 8449012 8466535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01841 714 847 Receptor kinase-like Gene Family AT4G23160 50.746 8.87e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pste6g01841 Lactamase_B_2 2.9e-10 CL0381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01841 6 8449012 8466535 Pste2g00403 2 3496303 3504776 PCT