Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01840 GCAGAAGACAATCCACCACTTCACCAACAACTTCCCCCTTCACATCGTCCTCTGCCGTATTTTTAATGATTGATCCTTTTGCCTTTCACCACCTGGATAGTTTCCTAACGTATAGTTTTCAAATTCCTTCTTCTTCATGAGCAAATAGTTTAGCATTTTAGCAACACTATAGATTTATATCTTCCTTTCTCTACACATTTCCCTTCCAAATTAAGTATTTCTACAATTTTCTGCAATTCTAGAATGGCCAATGCTATGTAATCAACTTGTCATATTTTTAGCCTTAGCTGCAACTCAAATTCAAAGTGTAAGTCTTTCTTGTTGTGAGTAGTTTGTCTCCACCATTGGAAGAGAATATGAAGTGTGAACAAGTTTGTCTCATTGATGAGCTAATGCAAGGGAAGGAGCTAGCTAAGCAGCTCTGTGACCATCTAGTTTCATCATCATCTCATGAAACAAATGAAGTCTTGATTGAGAAAATACTTTCCACCTATGAGAAAGCACTTGCCATGCTGAATTGCAAGGCTAATGTAGGAGAAAGTAAGGCCAACAACAGTGGCAGCATGAATGATTCCCATTCCTCCTTCACAAATGGTAGCCCCAAAAGAGAGGGCATGGAGCCTGAGGTTAACCACAAAGATGTCTGTAAGAAAAGAAAGACGGTGTCAAGGTGGACAGAACAAGTGAAGGTGTGCTTGGGAACATCTCTTGATGGATCTCTAAATGATGGCTATAGCTGGAGAAAATATGGGCAGAAGGACATTCTTGGAGCTAGGTTTCCAAGAGGGTATTACAGATGCACTTATAGAAATGTACAAGGATGTCTGGCCACCAAGCAAGTGCAAAAGTCAGATGAAGACCCAATGACATACGAGATAACCTACAAAGGAAGACACACATGCACCCAAGCAAGTCACTTAAACAGGGCAATAACACCCCCATCAAAAACAAAGATGGGATTGGGAGAAAAGAAGAACCAAGCCCATCAAAAGAATCAACCACAACAAGAGAAAATAGAACAGCCCCCGGAGACAATTTTCTCTTTTGGATTATCAGATCTTGAAGTTAAAATAGAGGACAGGGACCACATGGAGGACATTTTCCCATCATTTTGCTTTTCTGATCCATCAATAGGGTCTGAAAACGAGGACAACAATAACATTTTCTCATACGCCATGATTGAGAACAACTTAATGGAGAGCTTCTCTCCTTCATTCTTATCTCCAACTTCAGATATAGATACAAACATTTTCTGCGATTGGGCGAACACTGGACTAGGCCAAACTGTTCAAAGCTCGGAGTCTGATATCAGTGATATAGTGTCAGCACCAACTTCAGTCACCAATTCACCAATAATGGACTTTGATTTCCTCGATAAGCTCGATTTCGACACAGATTTCCCTATCAGCACCACAGAACTTTGCACTTTCTGAATTGTCCCACTTCAAAGTTAACAGCATATATAATTTGTATGCAGATTAACAGTGAGTTTTGTAGATCCCTGACTAGCAGCAGAACCGAGAGAAGGAAGTCCGTAACAAGCATAGATCATGTCCATAAATGAAGACAATAAAACTTCCCTTTCATGCTAGTTGAAGAGTGTTTTCATGTACCTAGGCTGCAATGTGAAAATAATTTGTAGGTGGTAACTTGTGGTTTTCTGATCAGTTCAGCAGTGTCTTCTTCTGGCCCAAACTGCAACAAATTGTGAAATAAATGAATTTTACCCCCTTCTTTTTGCGAGAACATAAATCATAATATATCACAACCACAATTTCCACTACATCTGCCAAGAATTTCCTGCAACATCAAGGATGGAATTGCCACCGGAATTTTAACCCTTGATTATGATCAATGGTTCAATGCGCTATTTCATGAAAATATAGGACAGAATTATGATCAGTGGCCTAACAGTTACTGACAGATTTCAGATACTTCCTCAATTATGCGTTCTGAGTTAAAACATTTGCATATTGTTCTTTCATGAGGATTGGGACCACAACTATCATTCATCAAGTCATAACTCTTTCTTAACTCTACAAGGCTAAATGGAATCCGAATCGCTCGAAAGGAAACATACATAAAGGATAAATAGAAATTTGTATGCATCTAGCTCTCAAATCTTCATCTATTATTTGGAATATTTGTGGATTGTCTGAATTCTCACCAAAGCATTTTTCTCTTAAAAAGCTATGAAAATAACATGTCACCACCCTTTCAATGTTCGGCCACAAAAAAAAAAAGAAAAGAAGA 2253 0.387 MKCEQVCLIDELMQGKELAKQLCDHLVSSSSHETNEVLIEKILSTYEKALAMLNCKANVGESKANNSGSMNDSHSSFTNGSPKREGMEPEVNHKDVCKKRKTVSRWTEQVKVCLGTSLDGSLNDGYSWRKYGQKDILGARFPRGYYRCTYRNVQGCLATKQVQKSDEDPMTYEITYKGRHTCTQASHLNRAITPPSKTKMGLGEKKNQAHQKNQPQQEKIEQPPETIFSFGLSDLEVKIEDRDHMEDIFPSFCFSDPSIGSENEDNNNIFSYAMIENNLMESFSPSFLSPTSDIDTNIFCDWANTGLGQTVQSSESDISDIVSAPTSVTNSPIMDFDFLDKLDFDTDFPISTTELCTF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01840 358 Gene3D WRKY domain 108 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste6g01840 358 ProSiteProfiles WRKY domain profile. 117 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g01840 358 MobiDBLite consensus disorder prediction 193 220 - -
Pste6g01840 358 MobiDBLite consensus disorder prediction 63 82 - -
Pste6g01840 358 SMART WRKY_cls 122 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g01840 358 Pfam WRKY DNA -binding domain 123 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g01840 358 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 345 IPR044810 GO:0003700
Pste6g01840 358 MobiDBLite consensus disorder prediction 63 92 - -
Pste6g01840 358 FunFam WRKY transcription factor 53 108 185 - -
Pste6g01840 358 SUPERFAMILY WRKY DNA-binding domain 121 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01840 Pste-Chr6 8444922 8448444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01840 1 298 WRKY Transcription Factor Family AT4G23810 35.821 2.08e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste6g01840 WRKY 7.8e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01840 6 8444922 8448444 Pste6g01840 6 8444922 8448444 ECH
Pste1g01901 1 5895806 5897599 Pste6g01840 6 8444922 8448444 ECH
Pste5g03442 5 27856973 27860083 Pste6g01840 6 8444922 8448444 PCT