Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01825 atggatatggtaatagaggttctctctggtgcgcacttctccggttggcatcctacaacgacgtcgtcttcttctccaacaacaccctcacgtcaccccttcgtcatcggtgtctctgggggcacggcatcgggaaaaaccaccgtgtgtgatttgatcattcagcaactgcaagatcacagagttgtcctcgtttgtcaggattcattctaccggggattgacaaatgatgagttgaaacgtgttcatgagtataattttgatcatcctaatgcatttgatacagagcaacttgtagaaactctagctaaactcaaatctggacattcggttcagattccaatatatgattttaagcttcatcagagatcttctgacacatccagacagttcggattgaatcttttcttttatgccagtaatgcgataatctgcagttacagagctcctagagagccaacggccgatatcatacccttgatatacttgcttgcgtgtctatcacagtatctaagcttgcctgaaattgtcaatgcatctgaagtaataattctcgagggtatattggtttttcatgaacaacgtgtccgcaacatgatgaatatgaagatctttgttgatgcagatccagatgtaaggcttgcccggagaataagacgtgatactgtagagaggggtagagatgtacactcgtacgcaaaatttgttaagcctgccttcgacgattttattcttccttccaaaaaatatgctgatatcatcatacctcgcgggggagagaatcgagtagcagttgacttgattgttcaacatatccgcactaagcttggccaacataacctctgcaagatatacccgaatttgaatgttatacagtctactttccaggttgtggaacatggtcttggttatttgccatttacagagaaacaagttatcacacctacaggctcaatttatactggagttgatttttgtaaaaaattatgcggagtatccattattcgaagtggggaaagcatggaaaatgctttgcgtgcttgctgtaaaggaataaagatcggaaaaattctcattcaccgtgaaggtgaggaaacccagcttatttatgagaagcttcctaaagatatttcggagagacatgttcttctcatggacccagtacttggtacaggtaacactgccagccaagcaatcgagcttctaataaagaagggagttccagaatcccggataatattccttaacctcgtttctgctcctgagggaatagattgtgtgtgtaagcgttttccccatctgaaaattgtcacctcagagattgaagaaggattaaatgaccagttccgtgtcataccagggttaggagaatttggtgaccgctactttggtacggacgattcttag 1407 0.0 MDMVIEVLSGAHFSGWHPTTTSSSSPTTPSRHPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLAKLKSGHSVQIPIYDFKLHQRSSDTSRQFGLNLFFYASNAIICSYRAPREPTADIIPLIYLLACLSQYLSLPEIVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSYAKFVKPAFDDFILPSKKYADIIIPRGGENRVAVDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGEETQLIYEKLPKDISERHVLLMDPVLGTGNTASQAIELLIKKGVPESRIIFLNLVSAPEGIDCVCKRFPHLKIVTSEIEEGLNDQFRVIPGLGEFGDRYFGTDDS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01825 468 ProSiteProfiles UvrC family, homology region profile. 168 264 IPR001162 GO:0009381
Pste6g01825 468 Gene3D - 15 137 IPR027417 -
Pste6g01825 468 PANTHER URIDINE KINASE 23 376 - -
Pste6g01825 468 SUPERFAMILY PRTase-like 268 464 IPR029057 -
Pste6g01825 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 268 IPR027417 -
Pste6g01825 468 Pfam Uracil phosphoribosyltransferase 295 465 - -
Pste6g01825 468 FunFam Probable uracil phosphoribosyltransferase 260 465 - -
Pste6g01825 468 PRINTS Uridine kinase signature 108 123 - -
Pste6g01825 468 PRINTS Uridine kinase signature 63 74 - -
Pste6g01825 468 PRINTS Uridine kinase signature 33 50 - -
Pste6g01825 468 Pfam Phosphoribulokinase / Uridine kinase family 35 263 IPR006083 GO:0005524|GO:0016301
Pste6g01825 468 CDD UMPK 35 275 IPR000764 -
Pste6g01825 468 CDD PRTases_typeI 324 438 IPR000836 -
Pste6g01825 468 Gene3D - 266 465 IPR029057 -
Pste6g01825 468 Gene3D - 169 265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01825 Pste-Chr6 8370097 8380010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01825 1 467 PRT Gene Family AT5G40870 64.818 0.0 640
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01825 6 8370097 8380010 Pste6g01825 6 8370097 8380010 ECH