Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01810 GTGGGAGTGAACACAGAACACATATACAGTCCCTCCATCGTTTTCAGGAATGCTGTTATCCCAAGTGCGTCTTCTCCATCCCATCCTCTCCATGAAGCCCCGTAACCCCTTCTTCTTCCCTCCCTCCAAGTTCCTCCGAAACGCACCGTTTAAGCTTCGCGCCTTCTCCACTCGCGACAACCCCTCGAAGAGTCTCGTGGACCAGGAGGCCGACCTCAGCGACTGGGTGGACGACCTCCGAACCGCCAGCACCAACCGCTCCCCCGATTCCGCCCGCCGCTTCGGTCTCCCCGACGAAGAGCGCGAGTTCCGCCCACCGCGGAGGAGCAATAGTAATAGGGTTTCCACGTTGGGGAAGAGAAGAGGCCAGGATTTGAGGAGAGGGAGACAGAGTGGGAATGCGAGGAGAAAGTTTCAACCAATGAGTGATGATGAGGTAGTGGACAGGAGAAAGTTCAAGCGTGGTGGCGTTGCAACATTTCTTAGCGAGGATGACAATGAAGACGAAGATGAAGATGCAGAGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGGTTCGAACCAGAGGCCCTCTGAACCTGCTCCAAGACCTTCTTCCCCTGGAGGATCTGATTCTTATTTAAGTGACACCAGATTTGACCAATGTTCGATCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAGAATGACTGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACTGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTGGTTAAGTTACCTCCAAGTGATCGTGATCAAAGGCGGCCACCGATTCTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATACTGCCATTGGTGTTCAGATCCTTGTTGCTACCCCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAAATAATTGCTGCAGTCCCCAAACAACGTCAAAGTCTTATGTTTTCTGCCACCATTCCAGAAGAGGTGCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAACACAGTTCAAGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCACCGTTGGATAAGCATTTCTCTTTTCTATATGTTTTTTTGAAGGACCATATTGCAGATGACGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCGGAACTTCTTGGCGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCTGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGATTGGTTTACCATCAGATAGAGAACAGTATATACATAGACTGGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGTTACTGGCTCCTTGGGAAGACTTCTTTCTATCCACTGTAAAGGACTTGCCTATTGAGAAAGCTCCAGTACCTTCAGTTGATCCTGATACTAAGAGAAAGGTGGAAAAAGCTATATCCCATGTTGAGATGAAGAGTAAAGAAGCAGCATATCAGGCATGGCTTGGGTACTACAATTCGAACAAGAAAGTGGGGCGAGACAAGTATAAGCTAGTAGAGCTTGCAAACGAATTTAGTCGATGCATGGGGCTTGATAACCCTCCAGCTATTCCGAAGCTAGTCCTTGGCAAGATGGGCCTTAAGAATATCCCTGGTTTACGTGCCAAATAGGTTTATTCTTTCAATTCAATTTCTTACATGTCATGTGAAATATGTATCCTTTTCTACTTAAAATGCTCCCTTATTATTGTATAACTCTAGACATCAAATTTCTATCATATATACACCT 2120 0.459 MLLSQVRLLHPILSMKPRNPFFFPPSKFLRNAPFKLRAFSTRDNPSKSLVDQEADLSDWVDDLRTASTNRSPDSARRFGLPDEEREFRPPRRSNSNRVSTLGKRRGQDLRRGRQSGNARRKFQPMSDDEVVDRRKFKRGGVATFLSEDDNEDEDEDAESEEEEILNKSRTALFGQQNGSNQRPSEPAPRPSSPGGSDSYLSDTRFDQCSISPLSLKGVKDAGYERMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKLPPSDRDQRRPPILVLVICPTRELASQAAAEATKLLKYHTAIGVQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQSLMFSATIPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFSFLYVFLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQIGLPSDREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKAPVPSVDPDTKRKVEKAISHVEMKSKEAAYQAWLGYYNSNKKVGRDKYKLVELANEFSRCMGLDNPPAIPKLVLGKMGLKNIPGLRAK 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01810 650 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 203 231 IPR014014 GO:0003724
Pste6g01810 650 Gene3D - 405 627 IPR027417 -
Pste6g01810 650 PANTHER RNA HELICASE 159 580 - -
Pste6g01810 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 550 IPR027417 -
Pste6g01810 650 MobiDBLite consensus disorder prediction 169 185 - -
Pste6g01810 650 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 396 IPR014001 -
Pste6g01810 650 Gene3D - 191 398 IPR027417 -
Pste6g01810 650 CDD SF2_C_DEAD 411 544 - -
Pste6g01810 650 MobiDBLite consensus disorder prediction 65 203 - -
Pste6g01810 650 MobiDBLite consensus disorder prediction 146 161 - -
Pste6g01810 650 Pfam Helicase conserved C-terminal domain 435 535 IPR001650 -
Pste6g01810 650 MobiDBLite consensus disorder prediction 76 92 - -
Pste6g01810 650 SMART ultradead3 222 414 IPR014001 -
Pste6g01810 650 MobiDBLite consensus disorder prediction 122 145 - -
Pste6g01810 650 SMART helicmild6 454 535 IPR001650 -
Pste6g01810 650 Pfam DEAD/DEAH box helicase 228 384 IPR011545 GO:0003676|GO:0005524
Pste6g01810 650 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 431 577 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01810 Pste-Chr6 8283267 8289380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01810 203 563 Eukaryotic Initiation Factors Gene Family AT3G19760 29.592 4.34e-45 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01810 6 8283267 8289380 Pste6g01810 6 8283267 8289380 ECH