Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01763 ATGAAGATTGAGGCGGGGGTGGGAGAGGTGTGGAAGGAGGAAGATAAAGCGATGGTGGTGGAGGTTCTGGGTCATGGAACTTTTGATTACTTGGTGGCAAATTCTGTTTTGAACGAGAATCTCTTGATGGCATTTGGGAGTGATGAAAATCTACAGAACAAGCTTTCGGATCTTGTGGAGCGACCAAATGCTTCAAACTTCAGTTGGAACTATGCGATCTTCTGGCAAATTTCGCAGTCCAAGAATGGGGATTGGGTTTTGGGGTGGGGAGATGGGTGCTGCAGGGAGCCAAGGGAGGGAGAGGAGATGAGAGGGGTAGCTGTTGATGATGAGAAGGTGCAGAGAATGAGGATGAGGGTGTTGCAAAAGCTGCACACGACGTTTGGGGGTTCAGATGAGGACAATTATGCATTTGGATTGGAGTGTGTGACTGACACGGAGATGTTGTTTCTTGCTTCCATGTACTTCTGTTTTCCCCGGGGACTTGGGGGTCCAGGTAAGTGTTTTGCTTCTGGGAAGCATTTGTGGCTCTTGGATGCCTTGAAATCTGGTTTTGATTGTTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCAGACTATTGTTTTAGTCCCCACTGATTTGGGGGTGGTGGAGATGGGGTCTACCAGGATGGTGGCTGAGAATTTCGAGTTGTTGCAGACCGTGAAATCTTTGTTTTCTGCACACCCATCATTAGTCCTTCCCAGGGTTAATCCCTTGGATTTAGTGAGTGAAAAGCTAGGAGACGGGAATGAGAATGCAAAGGTTCTTTTTTCTGGCTTGGCAATGGCATTTGGGGATAACAATAATAAAGAGGGAAAAGGGGTTCCAAAGATTTTTGGTCAGGATTTGAATTGTGTCACTCAATTGAGGGGTGTGAGGAAAGTGGAGGAGAGGACGAGGCCAGTTGATGGTTCTAGTTGGGGGACTGCTCGTCCTCCTGAAATTCTTGCTCCTATGTTGCCCAACTCTAATACATTGTTGGAGCTGGCAAATGGCACAAGGCACGATTTTGTGCACAATAAGTATCAGCATCTACGAGCAACACAAATGCAAATTGATTTCTCAAGAGGGAGATCAATGATTGATGACTGTGATGTTGAGGCCTCATGCAAGGAGGAAAGAGTAAGTGTTGGTGGTGACAAGAGGCCGAGGAAGCGGGGAAGGAAACCGGCAAATGGAAGAGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGAGAAAAGTTGAACCAGCGATTCTATGCTCTGCGAGCTGTAGTTCCCAATATCTCAAAGATGGACAAGGCATCTCTCCTGGGAGATGCTATTGCTTACATCAATGAGCTTCAAGAAAAACTCAAGACCATGGAGTTCGAGAGAGAGAGTTTTGGAACAACCTTTCCGGCTAATGCAAGATCGGAAAATCATCATAATGGAGCTCCAGATGTAGATGTTCAAGCTGCACAAGATGGGGTCATTGTAAAGGTGAGTTGTCCTATTGATGTTCATCCGGTTTCAAAAGTCTTTCAAACCTTCAAAGAGGCACAAATTGGTGTTATTCATTCAAAACTTGCTGCTGCAAATGATATTGTTTGCCATACGTTTGTAGTTAAATCCCAAGGACCCGATCAAGTTACAAAAGACAAGTTGATTGCATTATTTTCCAAAGAATCCAACTCTATACAAACTTTATGA 1707 0.4534 MKIEAGVGEVWKEEDKAMVVEVLGHGTFDYLVANSVLNENLLMAFGSDENLQNKLSDLVERPNASNFSWNYAIFWQISQSKNGDWVLGWGDGCCREPREGEEMRGVAVDDEKVQRMRMRVLQKLHTTFGGSDEDNYAFGLECVTDTEMLFLASMYFCFPRGLGGPGKCFASGKHLWLLDALKSGFDCCVRSFLAKSAGIQTIVLVPTDLGVVEMGSTRMVAENFELLQTVKSLFSAHPSLVLPRVNPLDLVSEKLGDGNENAKVLFSGLAMAFGDNNNKEGKGVPKIFGQDLNCVTQLRGVRKVEERTRPVDGSSWGTARPPEILAPMLPNSNTLLELANGTRHDFVHNKYQHLRATQMQIDFSRGRSMIDDCDVEASCKEERVSVGGDKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKLKTMEFERESFGTTFPANARSENHHNGAPDVDVQAAQDGVIVKVSCPIDVHPVSKVFQTFKEAQIGVIHSKLAAANDIVCHTFVVKSQGPDQVTKDKLIALFSKESNSIQTL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01763 568 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 234 IPR025610 -
Pste6g01763 568 Pfam Helix-loop-helix DNA-binding domain 408 454 IPR011598 GO:0046983
Pste6g01763 568 MobiDBLite consensus disorder prediction 305 325 - -
Pste6g01763 568 Gene3D - 398 467 IPR036638 GO:0046983
Pste6g01763 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 404 453 IPR011598 GO:0046983
Pste6g01763 568 CDD bHLH_AtAIB_like 401 465 - -
Pste6g01763 568 PANTHER MYC 40 556 IPR045084 GO:0003700|GO:0006355
Pste6g01763 568 MobiDBLite consensus disorder prediction 381 409 - -
Pste6g01763 568 SMART finulus 410 459 IPR011598 GO:0046983
Pste6g01763 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 407 473 IPR036638 GO:0046983
Pste6g01763 568 FunFam Transcription factor bHLH13 397 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01763 Pste-Chr6 8010750 8012456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01763 10 567 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.544 1.47e-177 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g01763 bHLH-MYC_N 1.6e-53 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01763 6 8010750 8012456 Pste6g01763 6 8010750 8012456 ECH
Pste5g03474 5 28196501 28199193 Pste6g01763 6 8010750 8012456 PCT