Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01724 atggcttcatcatcatcatcgtcttctaagaggcacccagtgtaccatggaatccgttgccgtggaggaaaatgggttactgaaatccgtgaaccgcgtaaaacgaaccgcatatggcttgggacgtttcagatgccggagatggcggctgccgcatatgacgtggcagcgttggccctcaaaggcggcgaagcggttctcaatttcccggactcggttggcaggtatcctgtaccttcatccaaatcccctgcggacatccgcactgccgccattgctgctgctgaactcatgaagcctgaacccagcaacaacaaccttaatgcatcaacaacaactaatgcaccggttgaatttgataacactagttttcctccttattatgaaaccgagtttcttgacgaggaagccatattctccatgccaagtttactgatcgacatggctgggggaatgttgctatctcctcccagaatgagccccccctccgatgactcaaccgaaagttatggtggagaaactttgtggagcttttga 537 0.0 MASSSSSSSKRHPVYHGIRCRGGKWVTEIREPRKTNRIWLGTFQMPEMAAAAYDVAALALKGGEAVLNFPDSVGRYPVPSSKSPADIRTAAIAAAELMKPEPSNNNLNASTTTNAPVEFDNTSFPPYYETEFLDEEAIFSMPSLLIDMAGGMLLSPPRMSPPSDDSTESYGGETLWSF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01724 178 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Pste6g01724 178 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Pste6g01724 178 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Pste6g01724 178 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Pste6g01724 178 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Pste6g01724 178 MobiDBLite consensus disorder prediction 156 178 - -
Pste6g01724 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 177 IPR045277 GO:0003700
Pste6g01724 178 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Pste6g01724 178 MobiDBLite consensus disorder prediction 160 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01724 Pste-Chr6 7695859 7696845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01724 1 178 AP2-EREBP Transcription Factor Family AT2G36450 48.404 7.26e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste6g01724 AP2 4.8e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01724 6 7695859 7696845 Pste6g01724 6 7695859 7696845 ECH