Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01720 atgaacattctggatgaatcattggacgaatcaaacagcgggtccgactcttgctcgtccccggaaacaagctctcacaatacagacgaggaagtacacccactagcatctgcgcggcccaagaaacgtgcggggcgtcgagtttttaaggagacgaggcacccagtataccgaggagtgagactgaggaacaacaataagtgggtctgcgaggttcgtgtccccaacgacaaatcaaccagaatttggctcggaacctatccaacgcctgagatggcagcccgtgcacacgacgtcgctgcgctcgccctccgaggcaagtccgcctgtctcaacttcgccgactccgcgtggcgcctccccttgcctgagtccactaatgccaaggagatacgccgtgtggctgctgctgctgctgccgccgttgcggccgaagatagctgcggggagcagttacagaatgacaacgccgttgttgattgccaagttagcagtactgacgtcagcgtcgaacaacattcgacttgtactaaagcctcacggggattttgtgaaataacaatgccagatgcatcaagtttggaggacatgcatgagtgtcttctcagtatggccgatcagcctttgcgatcgcctacttttgtaacatatgtttcggactggaactttgttgaggatgatgccgaggtgtccttgtggagctacactatctga 714 0.0 MNILDESLDESNSGSDSCSSPETSSHNTDEEVHPLASARPKKRAGRRVFKETRHPVYRGVRLRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPESTNAKEIRRVAAAAAAAVAAEDSCGEQLQNDNAVVDCQVSSTDVSVEQHSTCTKASRGFCEITMPDASSLEDMHECLLSMADQPLRSPTFVTYVSDWNFVEDDAEVSLWSYTI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01720 237 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Pste6g01720 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 235 IPR045277 GO:0003700
Pste6g01720 237 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Pste6g01720 237 SUPERFAMILY DNA-binding domain 56 116 IPR016177 GO:0003677
Pste6g01720 237 MobiDBLite consensus disorder prediction 1 50 - -
Pste6g01720 237 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Pste6g01720 237 MobiDBLite consensus disorder prediction 1 25 - -
Pste6g01720 237 Pfam AP2 domain 55 106 IPR001471 GO:0003700|GO:0006355
Pste6g01720 237 CDD AP2 57 116 IPR001471 GO:0003700|GO:0006355
Pste6g01720 237 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Pste6g01720 237 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01720 Pste-Chr6 7673285 7674475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01720 35 235 AP2-EREBP Transcription Factor Family AT1G12610 48.837 4.22e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste6g01720 AP2 5.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01720 6 7673285 7674475 Pste6g01720 6 7673285 7674475 ECH
Pste6g01720 6 7673285 7674475 Pste1g00470 1 1537365 1538138 PCT