Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01709 CATGGCTCCCTCAGGTATTTGTTGACTTTGACTCCGTCCTTGTTGTTTGTTCAAGAAATCACAACATACATGTCAATGGGGTCACCCCACTTTCTTAGCTTTTTTCACATAACATCTCGTTTACCATGAGTTTTTGTTATAAGATACATAATTCACCTGTTGTCAGTCCATTCTTCTTTTCTTTTTTTGTGATTGATATTGTTGCCTAACCAAATAGGGTAGGTAGGAAGGTGATACAATTACATAGAGAGGGGTTAGAGGGGAGGACTTGCTTTTATTGGAGATGAATTTGTCTTTTTCAGCTTGGGAACTGAGAAAATGTTAATGGAGAAAGATAACTGAGAGTGGCATTATTTAGCATCCCAGAAATACTGGAAAAGAAGGGGTGTCAATTGGTCAAGTCAACTTTACCCTTCTTGGACTCATTCTTCAAAATTCATAATGGCATAAGCATTTCTCTTTGCCATAGAATATTGCAAAATGGGGACGTCAACTTGTATGGATGAATGTAGTCAAAGCAATTTTAAGTTCTTGATGCATCTCAATTTGCTCTTCTCCCTTCCTTACAGCAAGCTGGACAAGATGCCAGGTGCAGAATCTGTTGCTTGTGCTGAAGAAAATACTAATGTGTACTCCGAAGTTTCTGCTGCCCTTCAGTCAACATCAGTGACAGTCTTCTTGCTTCATGGGAAGGAAAAATGTCTTATTTCCTTGCCTAAGTTGTGTTTCACGATGATGGTTCTAGAATTTTTATCTTCTAGTCCTACTGGACCAGTCATTTCTCAAACTATAGAGACCATTTCTGAGTTCCTAATTAATGCTAAAGATGTCCTTGTGAAGAAGGAGAGTTTTAAGGAACTTGCTGCATACGTGGAAAGAATTGAACCTATCTTAAAAGACCTGAGAAAAGGAAAAGTCAGTGATTCTGAGACACTCAACCGTGCCATTGAAATCATGAATAAAGAAGTTAAAGACGTAAACCAACTAGCTCTAGATTGCAACCAGAAGAGCAAGGTTTATTTACTATTGAACTGCAGGTCCATTGCTAAGAGCTTAGAAAACCACACAAAACAGATGAGCAGGGCACTTAGTCTTCTTTCTTTAGCCACATCAGGTCTTTCTTTAGGCATAGTTGAAGAAATTGAAAAGCTTTGTGAGAACATGCAGACAGCTGGATTTAAGGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGAGAAAACAATTTTGATCGTTCTTATGCGAATAAATTGCTAATTCTCATTGCTGAGACTGTTGGAATTAAGAATGAGAGGTCAACAATAAAGAAAGAACTTGAAGAGTTTAAGAGTGAGATTGAAAATGCACGTGTTAGGAAGGACATGACTGAAGCTATGCATATGGATCAAATCATCACCTTGTTGGAAAGGGCTGATGCAGCTTCATCACCCAAGGACAAGGAACTCAGATACTTTGCCAAACGGCAATCTTTGGGTAATCAAATCTTGGATCCATTGCAGTCATTTTATTGCCCCATCACGCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCAGGACAGACATTTGAAAGAAGTGCTATAGAAAAGTGGTTTGCAGAAGGAAACAAATTGTGTCCCTTGACCTTGATTCCTTTAGACACATCAATTTTGAGACCGAATAAAAAATTAAAAGAATCCATACAAGAATGGAAGGATAGGAATACAATGATTACAATTGCTACATTGAAAGAAAAAATCAAGTCTGGAAATGATGAGGAAGTGCTGCATGATCTGCAAACTCTTCAGAATTTGTGTGAAGAGAACGACCAACATAGAGAATGGGTGATTCTGGAAGATTACATACGAACCCTCCTCCAAATTCTGTCAAGAAACCGCGATATAAGGAAATTATCACTTGTCATCCTTGGCATGCTGGCAAAAGATAATGACGAAGCTAAGGAAAGAATTTCATGCGTTGATCATGCAATTGAATCGATTGTCCGGTCTCTTGGACGTCGTCCAGAGGAAAGGAAATTAGCAGTGGCACTACTGCTTGAATTATCCAAATACGATTTGGTACGGGAACACATTGGAAAAGTTCAAGGTTGCATACTACTGTTGGTGACTATGTCCAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTGGAGAGTCTTTCATACTCAGATCAGAATGTTATACAGATGGCCAAAGCAAATTATTTCAAGCATTTACTGCAGCGTCTGTCCACAGGACCAGATGATGTAAAGATGACTATGGCCACAAATTTAGCAGAAATGGAGTTAACAGACCACAATAGGGAGTCCTTGTCTGATGGTGGTGTATTGGTTCCTCTTCTTCACATGTTCTCGCATAATGATATAAAGCTGAAAACAGTTGCTACTAAAGCTCTTAGGAATTTATCAAGCTCAAAGAAAAACGGACAGGAAATTATTAGACAGGGGGCTGCGCGACCACTACTTAACCTCCTTTTTAATCAAAGCATACACACCGCAAGTTTGTGGGAAGATGTAGCTGCCATAATCATGCAACTTGCTGCATCAACTGTCTCTCAGGATGCCCAAACACCTGTTCTATTACTAGATTCCGATGATGATGTTTCTCACCTCTTCAATTTAATTAGTGCCACACATATATCAGAACATTATGTATTGCATCAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCAGCTTCATATATCAGAACCAAACTAAAAGAGTGTTCAGCTGTTCCAAAATTGGTTCAACTGTTTGAGAATGAAAACCTAAACCTACGAGCAAGCGCTGTAAAGTTGTTTTCTTGCTTGGTAGAGAATTGTGAAGAAGCCATCATACAGGAGCATGTGAATCAGAAATGCATTAATAATTTACTCAAGATCATAAAATCTTCATCCGATGAAGAGGAAATACTTTCTGCCATGGGAATAATATGCTATCTCCCAGAAATTGACCAGATAACTCAATGGCTTCTGGATGCTGGTGCACTGCCGATCATTAAAAGTTATGTTCAAGATGAAAAATACAGAGATCATCAAAAGAATAACTTAGTAGAGAATGCCATTGGTGCCCTATGCCGTTTTACAGTTCCAACCAACTTGGAATGGCAAAAGAGTGCAGCTGAAACTGGGATCATGCCTGTTTTAGTGCAGTTGCTTGAAACTGGAACCACCTTGACAAAACAACGTGTGGCACAGTCTCTTGCTCAATTTTCTAAAAGCTCATTTAGCCTGAGCAGGCCAATACCGAAGCGCAAAGGACTATGGTGCTTCTCAGCTCCTGCTGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTTAAATCATCATTTTGCCTTTTGGAGGTTAATGCAGTTGGACCACTCACAAGGACTCTTGGGGAATCTGATCCTGGACTTTGTGAGGCTTCTTTGGATGCTTTGTTGACGTTAATTGAAGGTGAAAGACTGCAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCAATACCACTTATAATCAGATATCTTGGTTCCCCCTCCCCAGGCTTGCAGGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGCTAGTCGAGTTCAAACAGAAGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGAGGGGTAATGGTAGTATTAGATCCATGTCAGCTAGAATATTGGCACATTTGAACGTGCTTCACGATCAATCTTCATATTTCTAAAATAAAAAATGTTGGTTCGTTTCTGTAACCATGTGGAACAATCTTCTCTTGATGCATTAATTGTGCATGACATCAAACTACATGCTTGGACAGGAAATGGAACCTTTGCTTCTTTAACTAAGGTAACTGCTTTCATCAGCGCAACAACGTGATGTTGTCTCACTTACCAGGGGAACCCAACATGGTATTCCTCAATCTTGTCACCATTTGACAAAATTGCTTTACAAGTGTTCACTTGGCTAGTTCTCATGAAGTGTCCCTTTAGCTCTTGAACCATTGTGACCTACGTTCAGTTGAGCTGCTAGTATGTCAAGAAAGCAGCAGCATTGGACATGCAGGGATTTTATTTGAGGCCTATATTAAACGTCTCAAATAATAGCTTTTACATTTGGAGATTGATTGTTGTTATTGTTTGGAGTAAAAGGAATATAAAAGATCTCTTTCTGGAATAATTGGGCTAAACGACAAACAAAGAATAGTTTAGTAGAATATTTACAAAATGGGCGTGGTTAACTCCAAATATTATGAAAATTGTTTATTTTCACCAGTCAAATGCAAACACACAAAAGCCAAACCAATTGGCCTATTAAGCATGGTCACATGAGCATAGCTCAACTTTCATGAAAATTTATCAAATAAGCAAAAGTAAATGGTGTGTTTGATAAAGTTAATAAATACACTTCGATCTTTATTTAATGGGTGTGTAGTAATGGTAACTATACAAAATGAATATACTTTGAAGTGTATTAACGCTACCCAATGGGCTATACTCACGTGATCATGCTCACTGTGCCAATTGGTTTGTTGTTTAGCTTGAACAATTGTATTCTTTACTATATGAACTCATTGTTATTCTTTTTATAGTGAAAGGTAGCGAG 4634 0.388 MGTSTCMDECSQSNFKFLMHLNLLFSLPYSKLDKMPGAESVACAEENTNVYSEVSAALQSTSVTVFLLHGKEKCLISLPKLCFTMMVLEFLSSSPTGPVISQTIETISEFLINAKDVLVKKESFKELAAYVERIEPILKDLRKGKVSDSETLNRAIEIMNKEVKDVNQLALDCNQKSKVYLLLNCRSIAKSLENHTKQMSRALSLLSLATSGLSLGIVEEIEKLCENMQTAGFKAALAEEEILEKIESGIRENNFDRSYANKLLILIAETVGIKNERSTIKKELEEFKSEIENARVRKDMTEAMHMDQIITLLERADAASSPKDKELRYFAKRQSLGNQILDPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKKLKESIQEWKDRNTMITIATLKEKIKSGNDEEVLHDLQTLQNLCEENDQHREWVILEDYIRTLLQILSRNRDIRKLSLVILGMLAKDNDEAKERISCVDHAIESIVRSLGRRPEERKLAVALLLELSKYDLVREHIGKVQGCILLLVTMSSGDDNQAARDATELLESLSYSDQNVIQMAKANYFKHLLQRLSTGPDDVKMTMATNLAEMELTDHNRESLSDGGVLVPLLHMFSHNDIKLKTVATKALRNLSSSKKNGQEIIRQGAARPLLNLLFNQSIHTASLWEDVAAIIMQLAASTVSQDAQTPVLLLDSDDDVSHLFNLISATHISEHYVLHQNIIQTFYALCQTPSASYIRTKLKECSAVPKLVQLFENENLNLRASAVKLFSCLVENCEEAIIQEHVNQKCINNLLKIIKSSSDEEEILSAMGIICYLPEIDQITQWLLDAGALPIIKSYVQDEKYRDHQKNNLVENAIGALCRFTVPTNLEWQKSAAETGIMPVLVQLLETGTTLTKQRVAQSLAQFSKSSFSLSRPIPKRKGLWCFSAPADIGCMVHGGICSVKSSFCLLEVNAVGPLTRTLGESDPGLCEASLDALLTLIEGERLQSGSKVLAEANAIPLIIRYLGSPSPGLQEKSLHALERIFRLVEFKQKYGASAQMPLVDLTQRGNGSIRSMSARILAHLNVLHDQSSYF 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01709 1091 Coils Coil 149 169 - -
Pste6g01709 1091 Coils Coil 277 304 - -
Pste6g01709 1091 ProSiteProfiles U-box domain profile. 342 416 IPR003613 GO:0004842|GO:0016567
Pste6g01709 1091 CDD RING-Ubox_PUB 347 396 IPR045210 -
Pste6g01709 1091 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 99 1091 - -
Pste6g01709 1091 Gene3D - 413 513 IPR011989 -
Pste6g01709 1091 SUPERFAMILY ARM repeat 417 1087 IPR016024 -
Pste6g01709 1091 Gene3D - 98 211 IPR036537 GO:0007166
Pste6g01709 1091 Gene3D - 715 934 IPR011989 -
Pste6g01709 1091 SMART arm_5 1003 1043 IPR000225 GO:0005515
Pste6g01709 1091 SMART arm_5 836 882 IPR000225 GO:0005515
Pste6g01709 1091 SMART arm_5 653 696 IPR000225 GO:0005515
Pste6g01709 1091 SMART arm_5 489 528 IPR000225 GO:0005515
Pste6g01709 1091 SMART arm_5 447 486 IPR000225 GO:0005515
Pste6g01709 1091 SMART arm_5 751 791 IPR000225 GO:0005515
Pste6g01709 1091 SMART arm_5 612 652 IPR000225 GO:0005515
Pste6g01709 1091 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 623 665 IPR000225 GO:0005515
Pste6g01709 1091 Gene3D - 958 1089 IPR011989 -
Pste6g01709 1091 Pfam U-box domain 347 413 IPR003613 GO:0004842|GO:0016567
Pste6g01709 1091 SUPERFAMILY RING/U-box 334 415 - -
Pste6g01709 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 412 IPR013083 -
Pste6g01709 1091 CDD MLKL_NTD 121 211 - -
Pste6g01709 1091 Gene3D - 514 705 IPR011989 -
Pste6g01709 1091 SMART Ubox_2 346 409 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01709 Pste-Chr6 7622186 7629514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01709 345 1091 U-box Gene Family AT1G76390 27.743 3.66e-58 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01709 6 7622186 7629514 Pste6g01709 6 7622186 7629514 ECH