Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01685 atggtgagggggaagacccagatgaagcgcatcgaaaatgatacaagtaggcaagtaaccttctccaagagaaggaacggcttgcttaagaaggcctttgagctttcagtgctgtgtgatgctgaagtcgctctcatcgtcttctctaccagagggaggctttatgagttctccagttcaagcctgtttaagttcggagatcctggaatgaaaaagactgatttctatggatttggagcctacaacctcattgtcctatag 261 0.0 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGRLYEFSSSSLFKFGDPGMKKTDFYGFGAYNLIVL 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01685 86 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste6g01685 86 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste6g01685 86 FunFam Agamous-like MADS-box protein AGL13 13 77 - -
Pste6g01685 86 CDD MADS_MEF2_like 3 61 IPR033896 GO:0000977|GO:0045944
Pste6g01685 86 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste6g01685 86 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste6g01685 86 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Pste6g01685 86 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste6g01685 86 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste6g01685 86 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste6g01685 86 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Pste6g01685 86 SUPERFAMILY SRF-like 3 67 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01685 Pste-Chr6 7476055 7477887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01685 1 61 MADS-box Gene Family AT4G11880 91.803 1.04e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste6g01685 SRF-TF 4.3e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01685 6 7476055 7477887 Pste6g01685 6 7476055 7477887 ECH