Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01681 TATAAAGCCAGCAATTGGGGACTTCACTCTGACCACCATGATAGGAACTCCAATAAGCAAAGGCCAATTGATACGAGCATATCACAATACACACACTCCCCCCAAAAAATCCTCTATCACCTAACTCACCTATCTTCAACTCAAGGCCTTATAGTCCCCGCAAGTGAGAGTGTTACACAGCATGGAATATACTTATTCAGCAGAAGCTGCAGAGACTGAAACTTACACAAGTAGCAGCACCACCCCACCTAGTGCTATGAGATCAAAGAAGAAAAACAACACAAGAAGGTTCAGTGATGAACAAATCAAATCATTGGAGACTATGTTTGAGACAGAGACAAGGCTTGAGCCTAGAAAGAAGTTGCAGCTGGCCAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGATGGAAGTCAAAGCAACTAGAGAGAGACTATGGCATACTCCAATCCAATTATAACACTTTGGCTTCACGTTTTGAAGCTCTAAAGAAGGAAAAACAAACATTACTAATTCAGTTGCAGAAGCTGAATAATCTAATACAGAAGCCATTGGAGCAAGGTCAGAGATGCACACAAATTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAACTGTGAAGCTGAGGTGAAGCCAAGCCCCTCAATGGAAAGATCAGAACATCTACTTGGTGTTCTGTCCGATGATGACGCCAGCATAAAGTTGGAAGACTTTGGCCTAGAAGATGAATCTGGTCTCTTGAATTTTGTTGAGCATGCTGATGGTTCCATGACTTCACCAGAAGATTGGAGTGCTTTTGAATCCAATGATCTCGTAGGCAAATCCACCAGTGATTACGAATGGTGGGACTTCTGGTCCTGAATGAAACAGAGCAACCAAAGTTTTGTGGAGGAAATATATGCATATGAATGCTTCATGTTTGGTTCCACATTTGGGATGTGATTTTTCACAGTAACTAGTTATAGTCTCCACATTTTTTAGTAATTGTCGTATTTATTTCTCCTTATTAAGAGTTTTCAACACGCGCTAATCAATAAAGAAAGAAACATCATGAAACACCACCTAAGATAAACGCAAAGCTAAGCAACTTTATTACATCTAAGATGTGTATTATGTCTGGCTATGCGATGCGATACGATCAATTCAATAAATTTCAGTGGAAATCAAAATGGTCAATTACTTTAAAAGGAATAAAAAGAG 1243 0.4014 MEYTYSAEAAETETYTSSSTTPPSAMRSKKKNNTRRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNTLASRFEALKKEKQTLLIQLQKLNNLIQKPLEQGQRCTQIEAANSMDSESENGGTMNCEAEVKPSPSMERSEHLLGVLSDDDASIKLEDFGLEDESGLLNFVEHADGSMTSPEDWSAFESNDLVGKSTSDYEWWDFWS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01681 240 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Pste6g01681 240 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Pste6g01681 240 MobiDBLite consensus disorder prediction 9 28 - -
Pste6g01681 240 FunFam Homeobox-leucine zipper protein ATHB-7 15 88 - -
Pste6g01681 240 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Pste6g01681 240 Coils Coil 108 128 - -
Pste6g01681 240 SMART HOX_1 29 92 IPR001356 GO:0003677
Pste6g01681 240 Pfam Homeodomain 35 86 IPR001356 GO:0003677
Pste6g01681 240 CDD homeodomain 31 89 IPR001356 GO:0003677
Pste6g01681 240 MobiDBLite consensus disorder prediction 1 38 - -
Pste6g01681 240 Pfam Homeobox associated leucine zipper 88 129 IPR003106 GO:0006355|GO:0043565
Pste6g01681 240 SUPERFAMILY Homeodomain-like 14 90 IPR009057 -
Pste6g01681 240 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Pste6g01681 240 Gene3D - 17 98 - -
Pste6g01681 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 166 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01681 Pste-Chr6 7443726 7445215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01681 31 240 Homeobox Transcription Factor Family AT2G46680 52.402 3.74e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste6g01681 Homeodomain 4.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01681 6 7443726 7445215 Pste6g01681 6 7443726 7445215 ECH