Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01674 atggctactcttcaacattgtagcttcttgttgattacatttacgtggatgttcataatcattggaaaggcagcaatagtagcgggtacatttcagcctagtcaatgggcatctgctcatgccaccttttatggtgacgaaactgctgccgccaccatgggaggagcatgtgggtacggaaatttgttcataaacggttacgggaaggacacggcagcattgagttctacattgttcaacaacggttatgcatgtgggacttgttaccagatacagtgtgttgaatcaagtgcatgttactccaatgtgccttacacaacagtgactgccaccaatctttgccctcctaattgggctcaggcttctgataatggaggctggtgcaacccaccacgtactcattttgatatgtccaagccggctttcatgaacatcgcacagtggcaagctggaattattcctgttatgtaccgcagagtaccttgcgtgaggagtgaagggctaagattctctttccaaggtaatgggtattggctattggtgtacgtgatgaatgtgggaggtggaggagatattgctaacatgtgggtgaagggaagtggaacaagatggattagcatgagccacaattggggggcatcctaccaagcatttgcaacattgggtggccaagctctttcctttaaggttacttcctacacaaccaaagagactataattgcatggaatgttgctcctgccaattggggcgtaggactaacttattcctctcatgtcaatttcaattaa 789 0.0 MATLQHCSFLLITFTWMFIIIGKAAIVAGTFQPSQWASAHATFYGDETAAATMGGACGYGNLFINGYGKDTAALSSTLFNNGYACGTCYQIQCVESSACYSNVPYTTVTATNLCPPNWAQASDNGGWCNPPRTHFDMSKPAFMNIAQWQAGIIPVMYRRVPCVRSEGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTRWISMSHNWGASYQAFATLGGQALSFKVTSYTTKETIIAWNVAPANWGVGLTYSSHVNFN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01674 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Pste6g01674 262 CDD DPBB_EXPA_N 35 162 - -
Pste6g01674 262 Gene3D - 168 262 IPR036749 -
Pste6g01674 262 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Pste6g01674 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Pste6g01674 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Pste6g01674 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Pste6g01674 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Pste6g01674 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Pste6g01674 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Pste6g01674 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Pste6g01674 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Pste6g01674 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Pste6g01674 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Pste6g01674 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Pste6g01674 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Pste6g01674 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Pste6g01674 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Pste6g01674 262 Gene3D - 23 162 IPR036908 -
Pste6g01674 262 SMART dpbb_1 71 157 IPR007112 -
Pste6g01674 262 PANTHER EXPANSIN-A15 18 257 IPR002963 GO:0009664
Pste6g01674 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Pste6g01674 262 SUPERFAMILY PHL pollen allergen 167 257 IPR036749 -
Pste6g01674 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01674 Pste-Chr6 7376772 7378270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01674 8 262 Expansin Gene Family AT1G12560 69.020 7.75e-125 353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01674 6 7376772 7378270 Pste6g01674 6 7376772 7378270 ECH
Pste6g01674 6 7376772 7378270 Pste1g00638 1 2042124 2042838 PCT