Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01663 ATGGACAAATTAATTATGTCTCCTTCTACATCGTCTTCTTTGGTTACTCAAGCCCAAGAAAACCCAACAGCTAGCCTTCAACAAAAACTTCAATTTGTCCTCCAAAGCCAACAGGATTGGTGGGTGTATGCGATATTCTGGCAGGCATCAAAAGACGAAAATGGGAAGCTATACTTATCCTTCGGAGAGGGGCATTTCCAAGGCCCAAAATTAGTAAGCAGCACAAAGAAGTGGATAAAAACAGTATCAAAGGAGGAAGTAAAGGACGCGGAGTGGTTCTACGTGATGTCGTTGACTCAAACATTCTCTATAGACAATGGGTCTTGTTCATCACTACCGGGGAAGTCATTAGCTTTGGGGTCGGTTCTCTGGCTGAAGGAGAAGAAGGAGCTCCAATTGTACAACTGCGAAAGGTCAAAGGAGGCCACGGAGCACGGGATCCAAACGCTGATATGCATCCCGACGCAAAACGGGGTGGTGGAAATGGGATCATACGACAGCATCAAACAGAACTGGAACCTCGTACAGCATGTAAAGTCTCTCTTCGTACCCCCTCCAGATCCCCTCGGTGTCCTCGACCGCGGAATCTCCTTGTCCGGACTCCAACCAACCAAAAAGCAGAAGCTAAGCAGCTACGTAGACTCGGAGCACTCCGATTCTGATTGTCCTCCCCCGTTGCCCAAGAAAAGAGGGAGAAAACCCATACTGGGACGGGACAAAACCCCCATCAACCACGTCGAGGCTGAGCGACAGCGACGGGAGAAGCTCAACCATCGCTTCTACGCCTTACGAGCTGTCGTTCCCAACGTTTCCCGCATGGACAAGGCTTCTTTGCTCTCCGACGCCGTCTCCTACATCACCCAGCTCAAGGCCAAGATTCACTCCCTCGAGTCCCAGCACCACCCTAATCAAAAAGTCAAGCCAGAAACCGCCGACACTCTCGATAACCAAAGTACCGCCACCACCACCACCACCACCGCATCCACCATCGTCGACCAAGATCAACATCATCATCATGGCAGGCCTTCTTCCTTTGCTCTAGAGGTCCATGTCAAGATCGTGGGCCCCGACGCCATGGTTAGAGTGCAATCTGAAAATGTGAACCACCCCGTAGCCAGGTTAATGTCTGCCTTGAGAGACCTACACTTTCAGCTCCACCACGCTAGCATTTCTTGTGTTAACGATCTCATGCTTCAAGATGTCGTCATTAAGCTTCCAAATGGTATCAGGACTGAAGAGGCTCTTAAATCTGCCATTCTCCTCAGGTTGGATCAGTAA 1278 0.5 MDKLIMSPSTSSSLVTQAQENPTASLQQKLQFVLQSQQDWWVYAIFWQASKDENGKLYLSFGEGHFQGPKLVSSTKKWIKTVSKEEVKDAEWFYVMSLTQTFSIDNGSCSSLPGKSLALGSVLWLKEKKELQLYNCERSKEATEHGIQTLICIPTQNGVVEMGSYDSIKQNWNLVQHVKSLFVPPPDPLGVLDRGISLSGLQPTKKQKLSSYVDSEHSDSDCPPPLPKKRGRKPILGRDKTPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYITQLKAKIHSLESQHHPNQKVKPETADTLDNQSTATTTTTTASTIVDQDQHHHHGRPSSFALEVHVKIVGPDAMVRVQSENVNHPVARLMSALRDLHFQLHHASISCVNDLMLQDVVIKLPNGIRTEEALKSAILLRLDQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01663 425 PANTHER MYC 18 421 IPR045084 GO:0003700|GO:0006355
Pste6g01663 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Pste6g01663 425 SMART finulus 246 295 IPR011598 GO:0046983
Pste6g01663 425 Pfam Helix-loop-helix DNA-binding domain 244 289 IPR011598 GO:0046983
Pste6g01663 425 MobiDBLite consensus disorder prediction 296 342 - -
Pste6g01663 425 MobiDBLite consensus disorder prediction 309 331 - -
Pste6g01663 425 MobiDBLite consensus disorder prediction 210 228 - -
Pste6g01663 425 Gene3D - 238 305 IPR036638 GO:0046983
Pste6g01663 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 302 IPR036638 GO:0046983
Pste6g01663 425 MobiDBLite consensus disorder prediction 209 241 - -
Pste6g01663 425 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 182 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01663 Pste-Chr6 7310043 7311320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01663 22 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 39.905 2.72e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g01663 bHLH-MYC_N 9.6e-45 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01663 6 7310043 7311320 Pste6g01663 6 7310043 7311320 ECH