Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01639 GTGTTTTCATTGATAGGTTTTTAGAAGAACAAACAGCTTCTTTTCCGGTCTTTATTAACAGTTTCCTTTACCCCCTTACCCTCTCATATTGTCTTTGGATTTTGTATTTTTCTTTTCTTTTTTTTTGTATTTGAGATTTTTGGGGTTGCTTGCTTGTGTTGGGAAATTCTTGTAATTGTTATTTCTTTAATGTCTCAACAAAGGCAATCTCAGATGGTGGGTGGTAACAACCCTGACCAATATAATGACACAACGTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAACAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCAATGATAAGAACACTGGGAGATCCAAGGGTTACGGCTTTGTCACATTTAAGGATCCTGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCTGTTATTGATGGGAGGAGGGCTAACTGCAATCTTGCCTCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTTCGCATGGACGGTTCAGGCCTCCACGTGGACTAGTGGCATCACTTGCTTATCATGGTTCTTCATCTACATTTTTCCATCAACCCCCTAGGCAATACACATTTCCTTATTCAACTTACGGGTATTCTGGATATTCACAAGACTCCTTGTATCCTGCGAGCTATTATAATGTCTATGGAGTTCAACAGTTTTCAGCATACTACCCATCTGCTGGAGCTTCTGGGGCAGTTGGGTTGATCCATAACATCTACCCTTTTTATGGTCAATATGCACAGAGTATTCAGGCTCATGGTTTTGGCGTTCAATACCCCCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGTTCCACTGGGATATTGTCATATACGTCTTCTGTGGCAGTGCCAACTACTAGTACAGTAACAGGAATTGTAGCTGCAACTACATCAACATCAACAGCAATAGGTGTGGCACTGGCTGGTAGTTCACAAGCAGACTAAACAAAATTCTACAACTACAAGGATACAGAACTTGCAAGGCTAACCTCATCCAAAGATGAATTCAAAATATAAGAGATATGTTAGATAAAGCTTGTGCACCTAACCGACATTAACCCATTCTCATTTTTCATCATGACAACAAAACTCAAAAGTCATCATTATCATACATGTTTGGTTTAGGAAAATAGGCTTTACTATTTATTTTTTTTTTAATTAGCTTGTAGGAATAGGGGAAGATCATATTCATTCATGTATTCAGCATCGGGTAGAATCTAACTGATTGAGCTTTGGATTCTACCTTTAGAATATTTCAACAAAAGATTATCATGTCTT 1338 0.3946 MSQQRQSQMVGGNNPDQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVINDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFSHGRFRPPRGLVASLAYHGSSSTFFHQPPRQYTFPYSTYGYSGYSQDSLYPASYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPFYGQYAQSIQAHGFGVQYPQMAQFPFLPQHYGSTGILSYTSSVAVPTTSTVTGIVAATTSTSTAIGVALAGSSQAD 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01639 271 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Pste6g01639 271 SUPERFAMILY RNA-binding domain, RBD 12 120 IPR035979 GO:0003676
Pste6g01639 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Pste6g01639 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Pste6g01639 271 PANTHER BOULE-RELATED 6 227 - -
Pste6g01639 271 Gene3D - 1 112 IPR012677 -
Pste6g01639 271 SMART rrm1_1 25 97 IPR000504 GO:0003723
Pste6g01639 271 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01639 Pste-Chr6 7145896 7147956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01639 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 9.26e-16 75.1