Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01628 atgggtcgtatgcacagccgcgggtttgtatcaattctttcaatctctatcattgatttcgttctcttcttcccattgttgaaaaccaacgtaacgtttgatttgtcttttggttccagtaagggtatatcctcttctgctttgccctacaaaaggacacctccaagctggttaaagatcgctccacaagatgtggaagaaaacatctgcaagtttgcaaagaaaggtttgtctccatctcagattggtgtcattcttcgagattctcacggtattgctcaggtcaagagcgtcactggcagcaaaatccttcgcatcctcaaggctcacgggcttgcacctgaaattccagaggatctgtaccatttgattaagaaggcagtttcaattaggaagcatctggagaggaacaggaaggacaaggactccaagtttagattaattcttgtggagagcagaatccaccgtcttgctcgctactacaagaagactaagaagctcccgccaatttggaagtag 519 0.0 MGRMHSRGFVSILSISIIDFVLFFPLLKTNVTFDLSFGSSKGISSSALPYKRTPPSWLKIAPQDVEENICKFAKKGLSPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPIWK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01628 172 FunFam 40S ribosomal protein S13 67 114 - -
Pste6g01628 172 SUPERFAMILY S15/NS1 RNA-binding domain 98 171 IPR009068 -
Pste6g01628 172 CDD Ribosomal_S15p_S13e 102 172 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pste6g01628 172 Gene3D - 67 114 - -
Pste6g01628 172 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 172 IPR023029 -
Pste6g01628 172 SMART Ribosomal_S15_2 102 172 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pste6g01628 172 FunFam 40S ribosomal protein S13 115 172 - -
Pste6g01628 172 Pfam Ribosomal protein S15 106 166 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pste6g01628 172 SMART Ribosomal_S13_N_2 38 92 IPR012606 GO:0003735|GO:0005840|GO:0006412
Pste6g01628 172 Gene3D - 115 172 - -
Pste6g01628 172 ProSitePatterns Ribosomal protein S15 signature. 130 160 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pste6g01628 172 Pfam Ribosomal S13/S15 N-terminal domain 39 92 IPR012606 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01628 Pste-Chr6 7086761 7088581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01628 1 172 Cytoplasmic Ribosomal Protein Gene Family AT3G60770 75.000 1.36e-87 251