LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g01628	atgggtcgtatgcacagccgcgggtttgtatcaattctttcaatctctatcattgatttcgttctcttcttcccattgttgaaaaccaacgtaacgtttgatttgtcttttggttccagtaagggtatatcctcttctgctttgccctacaaaaggacacctccaagctggttaaagatcgctccacaagatgtggaagaaaacatctgcaagtttgcaaagaaaggtttgtctccatctcagattggtgtcattcttcgagattctcacggtattgctcaggtcaagagcgtcactggcagcaaaatccttcgcatcctcaaggctcacgggcttgcacctgaaattccagaggatctgtaccatttgattaagaaggcagtttcaattaggaagcatctggagaggaacaggaaggacaaggactccaagtttagattaattcttgtggagagcagaatccaccgtcttgctcgctactacaagaagactaagaagctcccgccaatttggaagtag	519	0.0	MGRMHSRGFVSILSISIIDFVLFFPLLKTNVTFDLSFGSSKGISSSALPYKRTPPSWLKIAPQDVEENICKFAKKGLSPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPIWK	172

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g01628	172	FunFam	40S ribosomal protein S13	67	114	-	-
	Pste6g01628	172	SUPERFAMILY	S15/NS1 RNA-binding domain	98	171	IPR009068	-
	Pste6g01628	172	CDD	Ribosomal_S15p_S13e	102	172	IPR000589	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g01628	172	Gene3D	-	67	114	-	-
	Pste6g01628	172	PANTHER	RIBOSOMAL PROTEIN S15P/S13E	1	172	IPR023029	-
	Pste6g01628	172	SMART	Ribosomal_S15_2	102	172	IPR000589	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g01628	172	FunFam	40S ribosomal protein S13	115	172	-	-
	Pste6g01628	172	Pfam	Ribosomal protein S15	106	166	IPR000589	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g01628	172	SMART	Ribosomal_S13_N_2	38	92	IPR012606	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g01628	172	Gene3D	-	115	172	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g01628	Pste-Chr6	7086761	7088581	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g01628	1	172	Cytoplasmic Ribosomal Protein Gene Family	AT3G60770	75.000	1.36e-87	251

Showing 1 to 1 of 1 entries