Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01621 atgggtttccttcatgtcttacttcctatgtgtctgttggttgcacttcccagttcacagctagttcatggaaatgcagagctgagggctctcatgaacttgaaatcctctctagacccagaagacaggcatcttggctcgtggagtagtgatggtgatccatgcagtggttcgttcttgggggttgtgtgcaacgagcacaacaaagtggccaatatatcattgccaggaagaggtctttctggccgtgtctctccagctgtggctgaactcaaatgcttgtcaggtttatacttgcatttcaaccatctctctggggtcatacccagagagataggaaatcttaaagaattgctcgatctttatctcaacgttaataatctatctggaaccattcctcctgatattgggaacatgactagcctccaagtgctgcagttaggctataaccagctagaggggaacattccagaagaactgggttcaatgaagcagcttaacgctatttcttttcaacataacagattaaatggtcaaattcctctaagcttgggtaacttggagaagctaaggaggctgtatttcagctttaacaacttcactggtgccatccctgcaacactagcaaatactgcaaacttggaagttctagccattcaaaacaattctctttctgggattgttccttctgcattgaagaaattaagggaaggattccaagctgcaaacaacccaggtctctgtggggatggattttctaatttgaaagcttgcaacaaagataatgaatttggtgtcggtcagattagttccccaaatatatccataaacacaaatcatccaacaactttccccaagactgtaaatagccacctacattgtaaccaaacccgtcgctcaaaatcaggaagttttcttcatcttgtcgttgcagcaagtgttacaactaccattatcacattcatcagttctggaattttcatatttgtcagataccgccgctcgaggcagagggttaggaacacttcagattattctgaaggccaacatagtccttaccaacctaaagaattctacagaagctcatctccacttgtaaatcttgagtattattgtaatggttgggattcaatggctgatgatcaaaataccagtggattaaaccttgaatatttgaaccgttttagatttaatattgatgagattgaatcagcaactcaacacctttctgtggccactttattgagtaagagcaaactctcagcagtctataaaggagttctcagagatggttctcttgtggctattaggagtattagcgtgacttgctgcaaaacagaggaaggtgaatttgtgaaggggttgaaccttttaacctcactcaaacacgaaaacattgttaagatgagaggtttttgttactcaagtagtagaggtgaatggttttttgtctatgactttgccaccaggggtaatctgtctcaatatcttgacaaggaagatgggagtggccatgtacttgaatggtccaagagagtttctatcatcaggggtattgcgaaaggtattagttatttgcacagcaatgaagcaagcaagcctacaatagtacaccaaaacatttcagttgaaaaagttattttagacgatcaatttaaccccttgatatcggatgctggcctccctaagcttcttgcagatgatgttgttttctcagctcttaaagcaagtgctgcaatgggatatctagctcctgaatatatcactactggacgctttactgagaggagtgatatatacgcatttggggttattgttcttcaggttctatctggaaaggcattgataggtggttcaatacgggtggcagtagaaggattcagatttgaagaatttgttgacacaaatctgaagggagattattctaaatctgaagcagcaattctttcaaagcttgcaattcagtgcacccaagaagtgccagaggaaaggccaaccatggtggaggtgaatcaagagctgaccatgcttcatgaatcatga 2043 0.0 MGFLHVLLPMCLLVALPSSQLVHGNAELRALMNLKSSLDPEDRHLGSWSSDGDPCSGSFLGVVCNEHNKVANISLPGRGLSGRVSPAVAELKCLSGLYLHFNHLSGVIPREIGNLKELLDLYLNVNNLSGTIPPDIGNMTSLQVLQLGYNQLEGNIPEELGSMKQLNAISFQHNRLNGQIPLSLGNLEKLRRLYFSFNNFTGAIPATLANTANLEVLAIQNNSLSGIVPSALKKLREGFQAANNPGLCGDGFSNLKACNKDNEFGVGQISSPNISINTNHPTTFPKTVNSHLHCNQTRRSKSGSFLHLVVAASVTTTIITFISSGIFIFVRYRRSRQRVRNTSDYSEGQHSPYQPKEFYRSSSPLVNLEYYCNGWDSMADDQNTSGLNLEYLNRFRFNIDEIESATQHLSVATLLSKSKLSAVYKGVLRDGSLVAIRSISVTCCKTEEGEFVKGLNLLTSLKHENIVKMRGFCYSSSRGEWFFVYDFATRGNLSQYLDKEDGSGHVLEWSKRVSIIRGIAKGISYLHSNEASKPTIVHQNISVEKVILDDQFNPLISDAGLPKLLADDVVFSALKASAAMGYLAPEYITTGRFTERSDIYAFGVIVLQVLSGKALIGGSIRVAVEGFRFEEFVDTNLKGDYSKSEAAILSKLAIQCTQEVPEERPTMVEVNQELTMLHES 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01621 680 Gene3D Ribonuclease Inhibitor 24 308 IPR032675 -
Pste6g01621 680 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 290 675 - -
Pste6g01621 680 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Pste6g01621 680 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Pste6g01621 680 FunFam Protein NSP-INTERACTING KINASE 2 380 487 - -
Pste6g01621 680 SUPERFAMILY L domain-like 27 235 - -
Pste6g01621 680 FunFam Protein NSP-INTERACTING KINASE 2 488 678 - -
Pste6g01621 680 Pfam Protein tyrosine and serine/threonine kinase 413 674 IPR001245 GO:0004672|GO:0006468
Pste6g01621 680 ProSiteProfiles Protein kinase domain profile. 409 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g01621 680 Gene3D Phosphorylase Kinase; domain 1 372 487 - -
Pste6g01621 680 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Pste6g01621 680 Gene3D Transferase(Phosphotransferase) domain 1 489 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01621 Pste-Chr6 7044445 7051136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01621 6 522 Miscellaneous Gene Families AT4G22730 53.890 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Pste6g01621 PK_Tyr_Ser-Thr 4.4e-34 CL0016