Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01619 GATGAGATATGCATCAAGGTATTACGTGTGCTTCAAGCCAAAACCCATAACTCTCTCTCTTTCATTCCTAAGAACCCTTTTTCATCTCTCTCACTCCCACTCTCTTCTCTTAAATACTCTTCCTTAGATTGCTTCTAGGACCTTGTTTTTCGCAAGAAAACGAGGAACCGGTTCACGTGTCTGAGGACAGTTTCGTCAACATAGTATTCATTGAATGAGTTAATTGAGTGATAGCATAGAAGAGATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATACACTTCTGCCAATACTCTGCTTTTCCTGACCCTGAGGAGCTCCAGAACACAAACACTTTTTTTGTAAACCAAAAAATAATCTGGGAGGCTTCTGATTATCCAAGAGAATGTGATGGTGCTTGTTTACAAATGAGATTGTCTTATAGCCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATATAAGGTATACGAGGATGGGAAGACAACTATGTCCATTTATGAAAGGAAAGCAAGTCTGAAGGAATTCTACGGTGTGATCTTTCCTTCTTTACTACAACTCCACAGAGGAATCACTGATGTTGAAGAAAGGAAACAGAAAGATTTATGTGCTAACAAGTACAAGCCCAAAGATATAATAAGAAAAGGAAAACTATGTGAAATTGATGTAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAACAAGGTTGTGCTGCCCAATTGCAACCACACGTTGTGTATGAAATGCTACAGAAACTGGCATTCACGATCTCAATCTTGCCCTTTCTGTCGAGACAGTCTTCAAAGGGTGAACTCTGGTGACCTCTGGATCTACACAAACAGCAATGAGATAGATGATTTGACTTCAATCAACAAGGAGAATCTAAAAGACTATTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATATTCATGTCTTATCTTCAGCGCTATTAATTTTTACTTAACGAATTTGGATCTGCATAAGCAACTGTAGAATTTAATTAGGCTACTTATGTACATTGTCAAATTGCCTCTGGTGTTGCCAGATCCTGTATTCGTGGCTTATTCCTAGAATCTCAGCACTTCTGATTTCCCTTTAGTGATAGATAATTTTTACTTCAAAGTGTAAATCCTTATCGCCCTCATAGTGAAATATACTTGCACTCCATTGAAATTAAATTAAA 1268 0.3833 MRKSFKDSLKALEADIHFCQYSAFPDPEELQNTNTFFVNQKIIWEASDYPRECDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKVYEDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEERKQKDLCANKYKPKDIIRKGKLCEIDVEREEECGICMEMNNKVVLPNCNHTLCMKCYRNWHSRSQSCPFCRDSLQRVNSGDLWIYTNSNEIDDLTSINKENLKDYLCTLTSYL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01619 249 ProSitePatterns Zinc finger RING-type signature. 184 193 IPR017907 -
Pste6g01619 249 FunFam RING/U-box superfamily protein 150 216 - -
Pste6g01619 249 ProSiteProfiles Zinc finger RING-type profile. 169 207 IPR001841 -
Pste6g01619 249 Pfam Zinc finger, C3HC4 type (RING finger) 166 213 - -
Pste6g01619 249 SMART ring_2 169 206 IPR001841 -
Pste6g01619 249 SUPERFAMILY RING/U-box 158 212 - -
Pste6g01619 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 239 IPR013083 -
Pste6g01619 249 PANTHER RING FINGER PROTEIN 41, 151 3 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01619 Pste-Chr6 7038049 7041984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01619 117 207 C3H Transcription Factor Family AT5G01960 30.208 8.02e-07 47.8