Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01615 GTGGATCCGGTTGCATTGATCCATTTCACTCTCTATTGGGTCGTACCCTCTTCTTTAGTTTCCAAGAGCCTCTCTCTCTCTGCTTTTCCTAGTGGTACTGTCTTAGCTTTGATTCTCTGTTCTCTGTTTTGTTCTGTTTTCGCGTGTAAGTTCCTCTCTCTCCCCTTTTCAAAGAATGCAAAGGGCAAGGGAGCGGCAAAGACCTCAAAAGAGGCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGCGCAAGGCTTCAGGTAAGCCTGACAAAAGTAGTGCACCAAAGCCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCCAACAAGCCTAAAAGACCACCCAGTGCTTTCTTTGTGTTCCTGTTTAAAAATTATATGACATATTTCCTTGTCTGTGATAGTGAGGAGTTCAGGAAGACCTTCAAGGCTGAGAATCCTAATGTGAGGGCTGTATCTGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCTTGTCCAGTGCTATGGGATTTATGTTTTTTAATTTTGACTCCTCTCTTTGGAATGAAAAGGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATGAAAGCTTATGATAAAAAGCAGGCAAGCTCTGCAGATGATGATGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGAAGAGGCCAGTGGAGAGGAGGAGCACCATGAGGAAGAGGACGAAGACGAGGAGGAGGAAGAGGACGATGAAGATGATGACTGAGATTGATGTTGAAAACCTTGGTTATGATGTTTTGTTGGTGAGGGAGGCTATTATATATTCTGACTGTGCATACTAGGCTACTTTTTTATGTTTGTGCTGGTAGAAAGGAATGTCTTCTTTTGTTGGCACGATACATTGCTAGCTACTTTAGCTTCCCTCACTTAGCTATCGTACCTGAATTACTCTTTGTGCATTGTAGCCTTCAATGGGTTGCTTTTAAGTAATATAAATTTCTTTCTGATCAAAACAA 1030 0.4223 VDPVALIHFTLYWVVPSSLVSKSLSLSAFPSGTVLALILCSLFCSVFACKFLSLPFSKNAKGKGAAKTSKEALKPVDDRKVGKRKASGKPDKSSAPKPKKEKKAKKDPNKPKRPPSAFFVFLFKNYMTYFLVCDSEEFRKTFKAENPNVRAVSAVGKAGGEKWKSLSSAMGFMFFNFDSSLWNEKEKAPYEAKAAKRKAEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDEEASGEEEHHEEEDEDEEEEEDDEDDD 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01615 259 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 111 209 IPR009071 -
Pste6g01615 259 MobiDBLite consensus disorder prediction 208 223 - -
Pste6g01615 259 Gene3D High mobility group box domain 79 213 IPR036910 -
Pste6g01615 259 MobiDBLite consensus disorder prediction 208 259 - -
Pste6g01615 259 MobiDBLite consensus disorder prediction 224 259 - -
Pste6g01615 259 Pfam HMG (high mobility group) box 111 168 IPR009071 -
Pste6g01615 259 MobiDBLite consensus disorder prediction 67 112 - -
Pste6g01615 259 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 66 243 IPR031061 -
Pste6g01615 259 SMART hmgende2 110 210 IPR009071 -
Pste6g01615 259 CDD HMG-box_AtHMGB1-like 112 201 - -
Pste6g01615 259 SUPERFAMILY HMG-box 95 209 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01615 Pste-Chr6 7021662 7024543 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pste6g01615 HMG_box 8.2e-07 CL0114