Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01588 ATGGATGAGTTTAACGGCGCGATGCGAGAACAGAGCTCGGAGTACAATGGTGATGTTGTTCACTGGGAGAGGTTTCTGCCGCGGATGGTCCTCAGAGTGCTCCTCGTTGAAGCTGATCATTCCACCAGACAAATCATCTCTGCGCTTCTTCGAAGATGCAGTTACACAGTTATTTCGGTTCCTGATGGATTAAAGGCATGGGAAACGTTGAAGAAGAAGGCACCTGAGCTAGATCTCATATTAACAGAAGCTGAACTGCCAGCAATATCTGGATTTGCACTTCTTTCTTTAATCATGGAGCATGACATTTGTAAAAATATTCCAGTCATAATGATGTCTTCTCATGATTCAGTTAGCATGGTGTTGAAATGCATGCTAAAAGGGGCAGTTGATTTTCTTATAAAACCCATTCGAAGGAATGAGCTTAGGAACTTGTGGCAGCATGTATGGAGAAGGCTCGCTATTAACACTCCTTCTCAATTTACAACATTTTCGCCGAAAAAACTTAAAACTGCCTCAGAAGACAATTCTGCAAGCAAGAGAACAAGTGAGGCTCAAAGCACTTGTACATTGCCAATTTTGGAAGGTGAGAGTACATACGTAAAAAATATGCAGGATGTGCCTCAAGATGTACATAGCCAGGTTTTGCAAACTCCTGTGCAGAGCACTTGTACGTCACCAATTTTGGAAGCCGAGAGAACATACATGGAAAATATTGAGGATGTTCCCCAGCTGAAAAGTACTAAAATGAACAAAATTGATATGGTGAAGCATGAAAAGTTTGCTAAATTTGAAAAGGATTCAGCTAAGCTTAATGATGGAACGCCAGATAAATCAATTACAATTGAATCAGAGGCTGCAAGGTGCTACAAAACTTTTGAATCGACAGATTTAAGGCTAGAACAAAACCTTGGTGTTACTGAACCAGAAACTGAAAGCAAGGATGAAATCTTTAAATCTGAGTTAGGCAGAGTCAATTCAAATATTAGTACTGAGATGCAAGGAGGCAGTGATGAAGGGGTGAAACCCTCTAAAGGAGCTGTTAACTTGATTGCCGCATTTGGAAATCTTCCAAAGCACCCCAATGAAAACTATAGTCTCAATGGTGGTAATACAACCAAGTTTGATTGTGATATGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGCAGCTCAGGTAAGCAAACAAGCGAAGCAAGTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGGTGA 1254 0.4043 MDEFNGAMREQSSEYNGDVVHWERFLPRMVLRVLLVEADHSTRQIISALLRRCSYTVISVPDGLKAWETLKKKAPELDLILTEAELPAISGFALLSLIMEHDICKNIPVIMMSSHDSVSMVLKCMLKGAVDFLIKPIRRNELRNLWQHVWRRLAINTPSQFTTFSPKKLKTASEDNSASKRTSEAQSTCTLPILEGESTYVKNMQDVPQDVHSQVLQTPVQSTCTSPILEAERTYMENIEDVPQLKSTKMNKIDMVKHEKFAKFEKDSAKLNDGTPDKSITIESEAARCYKTFESTDLRLEQNLGVTEPETESKDEIFKSELGRVNSNISTEMQGGSDEGVKPSKGAVNLIAAFGNLPKHPNENYSLNGGNTTKFDCDMQLELSLRSDFPGSSGKQTSEASEESQRLNHSNTSAFSW 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01588 417 SUPERFAMILY CheY-like 31 157 IPR011006 -
Pste6g01588 417 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Pste6g01588 417 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Pste6g01588 417 MobiDBLite consensus disorder prediction 167 187 - -
Pste6g01588 417 Gene3D - 29 224 - -
Pste6g01588 417 SMART REC_2 31 146 IPR001789 GO:0000160
Pste6g01588 417 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 302 IPR045279 GO:0009736
Pste6g01588 417 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01588 Pste-Chr6 6921696 6924180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01588 8 202 Response Regulator Gene Family AT5G24470 60.680 3.82e-80 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste6g01588 Response_reg 4.3e-21 CL0304