Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01573 TTGGGACCTTGTAAACCAGACAAGTAACTCCCTCACTCGCACATTTTCTCTCTCTTCACACGCTCACCAATTCTTAACACAGTTTGAAATATATGCATATCTTGTATAACCCCAGTTGAGAAGTTTCCACCTTTCATTTCTTACCTCTCTACTCTCTCTTTGGATATATCATATCACCCCTACTACTCTACTGTTGTGTGTCCTGAGACTTGTTCCAAGCACAGCATTAATTATTATTCTATATAAGAGGGTATCAAAGCCATCAGAAACACCAAGGAATATATTGCGGGGGTGTTACTCATATGGGGTCTCGTTCTGCTTCTCCATAGGGATTACATTTATTACCATTCTTTTGTTAGTATCACTACCATACGGAATGTTGGTCACCCTCATAGACGCCTAAGTAAGCACCTACCATTTACTGCTCAGCTTTGATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGCGATCCCTTGGGAGTGAATTATTTGGACCAAGTTCTGGGGGATGAAGAAAGCTTCAGGCTGGAGGAGGAAGAACAGTTTCTGATATCAAGTTTAGAGGACAACATGCCATTCCTTCAGATGCTTCAGAGTGTAGAATCCCCACAATTTTTCCCTTTGAAAGAGCCAAACTTTCAAACACTTCTGAGGCTGCAGCACATGAAGAAGCCATGGGAGGGGATAGCCTATATTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGTTAGAGAGTTGTGTGACACATGACATGTTAGAGATGCAGTCACCGGTGAAGTCAGAGAGCAATGAGCTCCAGCACCCACTTTCAATTTCATGTGTTGAGAAAGTGAACTACGAGTGCAACCAGGAGCCACAGAAAGCACCACAATCATGCTCCAAATCCCAGCCAACAGCCACAAGGGAAAGGAAAAAGAGAAAGAGAACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGACGCCAAATGAATGACCACCTCAGTGTCCTAAGGTCCCTCATGCCCCCTTCATACATTCAAAGGGGTGACCAAGCTTCAATAATTGGGGGAGCAATAGATTTTGTGAAGGAATTGGAGCAGTTGCTTCAGTCCCTTGAGGCGCAAAAAAGGCTGAGAAAGAGTGAAGAGGGTGGTGGTTGTTCTTCGAGTTTGTCGTGTAAGCCCCCACCAACATCATCATTATCATCACCACACGGATATGGAATGAGGTCATCAACTAGTGAGGAAGTGAACTGTGGGGATGAGGTGAAGGCAGAAAACAAGTCAGAGGCAGCAGACATAAAGGTCACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAGCCAGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGATTGCAAGCTATGTTCAGCAAGTGACATTGCAGAGGCAGTTCATCAAATATTCAGCTTCATTAATGGTAGCTAGAGACCACTAGCTCCAACCTTAGGGAGTGGTAGCAGAAGAATAAAGGACGAATCATTGCAAGGAAGATGTAGAAACGGGGAACACAGGGCACCCATTTCTTGTCTACATATCAATATGAGATGTATAATGTTAGGTAGCTCAGAGATGATAGATGGTACTGAAGGAAGATAAGGCATGTGATATATTATATGCTGCTCAAATGATTTTTCTTGTGTTAACTTAATTAAAATGCTAGCTTTGTTGTATAATTATGGTGAATTGCTTATTAATTTGTTTCTTTGGTGCATTGAGAATTTGGATTGATGGATTGTGGTACGGTGGTGGTGGTGGATAGAGGTAGAGGGTAGGGCCCATAAGAAGGAAGACCCCACTTTGAAATTTTTGAACTTTCTCATCATTACGATTTACTAGGAGGGGAATGATGCTTCTCTTTTTATATTGACTTTGCGTGGTGGCCGTATACCATAAAAGATGTTTCATAATGTGTGTTCTCA 2077 0.4304 MERLQGPLNSCFFGDPLGVNYLDQVLGDEESFRLEEEEQFLISSLEDNMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHMKKPWEGIAYIPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSISCVEKVNYECNQEPQKAPQSCSKSQPTATRERKKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRLRKSEEGGGCSSSLSCKPPPTSSLSSPHGYGMRSSTSEEVNCGDEVKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEDCKLCSASDIAEAVHQIFSFINGS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01573 382 Gene3D - 170 251 IPR036638 GO:0046983
Pste6g01573 382 PANTHER TRANSCRIPTION FACTOR FAMA 119 376 IPR044283 GO:0003700|GO:0010052
Pste6g01573 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 246 IPR036638 GO:0046983
Pste6g01573 382 CDD bHLH_AtFAMA_like 183 256 - -
Pste6g01573 382 Coils Coil 228 248 - -
Pste6g01573 382 MobiDBLite consensus disorder prediction 144 181 - -
Pste6g01573 382 SMART finulus 186 237 IPR011598 GO:0046983
Pste6g01573 382 FunFam Basic helix-loop-helix transcription factor 171 246 - -
Pste6g01573 382 MobiDBLite consensus disorder prediction 251 282 - -
Pste6g01573 382 MobiDBLite consensus disorder prediction 246 289 - -
Pste6g01573 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Pste6g01573 382 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01573 Pste-Chr6 6868417 6871618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01573 43 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.064 2.55e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g01573 HLH 3.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01573 6 6868417 6871618 Pste6g01573 6 6868417 6871618 ECH