Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01520 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAGGAGGAAGAGGAAGAGGAAACAGCAGAAGAAATCATCACAAGAGAAGAAAGTAGCAGTAAGCACCACTACCCCTTTTCTTCTCCCTCTTTGTCTTTATCTTCTGCTCCTTCAATATCAAATTATACTACTGCTGCTGCTACTGCTGCACGTCCTCATCATCATCATGTAATAAATATTCCTCACCAACAAAATCCATGGCTGGGGATGAATATACATGATCATGATCATCAGCTTCTGTCTCCAGAGACCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTGTTACACCAGCACCAGGATGCAGCAGGTTCCAATTTCGTCATCAGCAATCATCATCACCACACAACAAAGCAGCTAGATTTCATGGACTTGTCACTGGGGAGCAGCAAGGATGAAGCGAATTTTCAAGGATCAGGAGGTGGAACTTCTTCTGTGTATGCTCATCATCATGCAAGTGGTAGTTCTTCTGCCAATGGTAACAACCAGCAGCAGCAGCCTGCTGAGAAGGAGCACATGTTTGATAAAGTAGTGACACCAAGTGATGTGGGGAAGCTGAACCGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCGCTTGATTCAACAGCCAATGAGAAGGGGCTGTTACTCAATTTTGAGGACAGGAATGGCAAGCTGTGGAGGTTCAGGTATTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGTCGTTTTGTGAAAGAGAAGAAGCTTGATGCCGGTGACATTGTGTCTTTCCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCACCATCACCATCATGGCCCTGACCCTTCAACCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCATTTGATGTCCATCAGATGGGGTGCCACTGGCAGATTGTACTCCCTCCCCTCTCCAACCCCACCACGCCACCATGACCACTTGCAACAACCTCTCAATTACAACGCCATGTATCATCATCCCTTTCATCACCATGGTGGTGGAACTGGAAATGGTACTCATCACCACAACTATCACGATTTGAGTACTTCAGGACCTGGCTCAGTCTTTTATCTCAGGTCAACACCCCCATCAATGCCATTGGCTGATCACCAAACCTTCAACACTAGGCAACAACAAGAGGGAGGCAATGTTTCTCTTCCCCCTATGATCATTGATTCTGTTCCAGTTGCTCACCATCATCACCATCATCATCACCATGGTGGCAAGATTTGTTCTAACACTAGTACTAATACTAGTACCAGCCCCAGTACTGCAGGCAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCAACATCAGAAGACCCCAGATGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGTAACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGATACACTTTTGTCATCATCATCAGCAAGGTTTGGGGATCAGAGAGGAGGGGAACCTTCAATGCTTTTTGATCTGGACCCTTCTTTGCAATACCGGCAGTGA 1641 0.4595 MELMQEVKGYSDSREEEEEEETAEEIITREESSSKHHYPFSSPSLSLSSAPSISNYTTAAATAARPHHHHVINIPHQQNPWLGMNIHDHDHQLLSPETTESHNSSSGLGLLHQHQDAAGSNFVISNHHHHTTKQLDFMDLSLGSSKDEANFQGSGGGTSSVYAHHHASGSSSANGNNQQQQPAEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSTTLFTPFFLPNQPHLMSIRWGATGRLYSLPSPTPPRHHDHLQQPLNYNAMYHHPFHHHGGGTGNGTHHHNYHDLSTSGPGSVFYLRSTPPSMPLADHQTFNTRQQQEGGNVSLPPMIIDSVPVAHHHHHHHHHGGKICSNTSTNTSTSPSTAGKRLRLFGVNMECASSTSEDPRCFSLLSSSSMAHVTMANSNSPPSSSLPPLQLLREDTLLSSSSARFGDQRGGEPSMLFDLDPSLQYRQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01520 546 MobiDBLite consensus disorder prediction 148 183 - -
Pste6g01520 546 SMART B3_2 189 294 IPR003340 GO:0003677
Pste6g01520 546 MobiDBLite consensus disorder prediction 148 190 - -
Pste6g01520 546 MobiDBLite consensus disorder prediction 1 49 - -
Pste6g01520 546 Pfam B3 DNA binding domain 189 293 IPR003340 GO:0003677
Pste6g01520 546 ProSiteProfiles B3 DNA-binding domain profile. 189 294 IPR003340 GO:0003677
Pste6g01520 546 MobiDBLite consensus disorder prediction 442 457 - -
Pste6g01520 546 FunFam B3 domain-containing protein 182 302 - -
Pste6g01520 546 MobiDBLite consensus disorder prediction 516 546 - -
Pste6g01520 546 Gene3D - 183 301 IPR015300 -
Pste6g01520 546 CDD B3_DNA 187 276 IPR003340 GO:0003677
Pste6g01520 546 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 482 IPR044800 GO:0003700
Pste6g01520 546 SUPERFAMILY DNA-binding pseudobarrel domain 185 290 IPR015300 -
Pste6g01520 546 MobiDBLite consensus disorder prediction 429 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01520 Pste-Chr6 6643286 6644926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01520 180 473 RAV Transcription Factor Family AT2G46870 49.000 1.00e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste6g01520 B3 4e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01520 6 6643286 6644926 Pste6g01520 6 6643286 6644926 ECH