Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01453 ATGAGTAGTACCTCAGTGTCAACTGACAACACACCCGATGAAGCCGGAACAATTGAGATAACTGGGAAGATCATGGTTGTGGCTATAATATTCCTCTTCATGGTGGTTGTGTTTGTTTTGGTGCTCCATCTCTATGCAAAATTTTTCTGGTGGAGCATAGAGGAAAACGCCGCTCCTCAGCCCCGTAACCGGCGGCGGCGGCGGCGCCGGTTTGTCTTCGCCCCCGGCCAAGACCCGGTGATTTATGAGACTTACCACCAAGTTGGGCTTGACCCTTCAGTTCTTAAGTCCTTGCCGGTGTTGGTTTTCCCATCTGAGGACTTCAAAGATGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGTGAAAAGGCCAGGCTTTTGCCTAAATGCAATCATGGCTTTCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTGTCCTCTTTGTAGGAACCCTGTTGCCTTTGAATCCTCTAAGAGTGAACAGAGTAATGTCTCGGGGAATTCACAACACCAAGACAATTCAGGTGCTGTGAGTGGTTTGGAGTCTTCAAATTTTCCCACAAATGTGTTGGTTTGGGGGAACCAGACACAGGTTAGTTCTTTTAATGTTTCATTCGAAGAACAAGAAGAAGGTACTTCTCAGCAGCCACCTTGTGCTCCACCATCTACATCATCAGCTTCTCCTGTTAGTATTAATGTTAATGCTAGGTGCCATGGAATGTTGGTGGTTGATATTCCAAGCGAGTGCACTTCCTCCCCTTTGTCCCCTTCTGGGAGTAGGTGTGCTGAAGCTGAGGTGAAATCACCAATGGCTGCCACATTGAGGTCATTCAAGAGGCTTTTGAGCAGGGACAAGAAGTTAAGTCCTTGTGGTCCCAGTTCTGTAGATGTGGAACAAGCACAGAGCTAG 930 0.4742 MSSTSVSTDNTPDEAGTIEITGKIMVVAIIFLFMVVVFVLVLHLYAKFFWWSIEENAAPQPRNRRRRRRRFVFAPGQDPVIYETYHQVGLDPSVLKSLPVLVFPSEDFKDGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVAFESSKSEQSNVSGNSQHQDNSGAVSGLESSNFPTNVLVWGNQTQVSSFNVSFEEQEEGTSQQPPCAPPSTSSASPVSINVNARCHGMLVVDIPSECTSSPLSPSGSRCAEAEVKSPMAATLRSFKRLLSRDKKLSPCGPSSVDVEQAQS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01453 309 SUPERFAMILY RING/U-box 94 162 - -
Pste6g01453 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 180 - -
Pste6g01453 309 MobiDBLite consensus disorder prediction 166 187 - -
Pste6g01453 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 161 IPR013083 -
Pste6g01453 309 Pfam Ring finger domain 113 156 IPR001841 -
Pste6g01453 309 FunFam RING-H2 finger protein ATL3 82 161 - -
Pste6g01453 309 CDD RING-H2_EL5-like 113 156 - -
Pste6g01453 309 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Pste6g01453 309 MobiDBLite consensus disorder prediction 210 234 - -
Pste6g01453 309 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01453 Pste-Chr6 6321407 6322336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01453 1 292 C3H Transcription Factor Family AT1G53820 42.767 3.62e-64 203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g01453 6 6321407 6322336 Pste6g01453 6 6321407 6322336 ECH