Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01438 AACACATGGAAAGTTTTGAGAAAGATGAGGTGCCAATTTTGTCAGATATTCATCCCAAACTATCAAAAGAACCTAGTGATTCTAAATTCCCAAGGCATGTATCTAGGACTCGAAGTGTATCAATTTCTATCCCTGCAACACTCACGGAGCCATATGAAAGAGATACTAATCTTGTGGGATATACTGGTCCCCTACGGAGTCAGAGAAAAACTTCATTTAATCAGATGAGTGGTCCATTGAATGTTACTAATAGACCTGGAAGCCTTTTCCAGCAGAAAAGAGTGGCACCAGAGTATCAAACAGCAGAAAGTAATACAGAGAGTTTTCCTTCTAGCTGTGGTATGGGTGAAAATGATTTTCAGAACAACTATGCTGGCAAGAATGAACATTTAGTTAGGTCCGGTCCACTGGGAATGTGTAATGATCCGTATTGTACAACTTGCCCAACTTACTTCAAGGCTACTCAACAAAGGAATTCAAAAGCTTCGGGTATATTCAATCCTGAGTTTCGCACTACCCTTTATGGGGATGTCAAGGACTGGGCAAGAAGAGTTTTTACTTTCTTAATTCCTCATATTCCTAGAGTTATGAATCCTCATAACAAACTTGTACAGCAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTCTTTTTGCTCTCTATGCAGAAGGAAAATAAATGTATTGTTATCAACTGGACTATGACAAACACACTTGTTGTACTTAGGAGTATGAATGATTTCATACACTTCCTAAACATTGTTCTTCAGTTTAGGTTAGCTTATGTGGCTCCCGAGTCTAGGGTGGTTGGTGCTGGGGAGTTGGTTGACCATCCTAAGAAAATAGCTCTCCACTACCTTCAAACATCTTTTATTATTGACTTATTTGTTGTACTTCCACTTCCCCAGATATTCATATTGTTTGTCCTACCAAAGCACTTGGGGACGGGGTCATCAGGAGCAAACTATGCAAACAGTTTTTTGCGTATTGTCATCCTTGTTCAGTATATTCCCAGATTGTGTAGGTTTCTTCCTATGCTGATTTCTCCAACTGGATTCATATTTGAATCTCCGTGGGCAAGTTTCTTTATAAATCTTTTTACCTTTATGCTATCTGGCCACATTGTTGGATCCTGGTGGTACCTCTTTGGTTTGCAGAGGGTTAAACAATGTCTACGAGATGCTTGCGTTACAGAAAACATTAATGGATGCTCAAAATTCATTGATTGTGGGCATGGAGAAACTGAAGAATTTCTACATAATAATAAAATCAATTGGCATAATTGGACAAACAGTAAAGCTGCAGGTGCTTGTTTTACTGAAGATGGTTTTCGTGATGGTTATGGTATCTTTCTTAGAGCTGTCAACCTTACTGCAGATCATAAAGTGATGACTAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTACACTGGCTGGCAATTTAAGCCCTAGCTATTATGTCCCTGAAGTTCTTTTTACTGTGGCCATTATAGGATTGGGACTGTTGCTGTTTGCTCTTCTCATCGGAAACATACAGAACTTTCTTCAAGCTCTAGGACGCAGGAGGCTAGAAATGTCACTTAGACGACGTGATGTTGAGCAATGGATGAGCCATCGGCGCTTAGCAGAAGATATGCGAAGGAGAGTGCGACAAGCTGAACGTTATAACTGGGCAGCAACAAGAGGGGTGAATGAAGAAATGCTTCTGGAGAATTTGCCAGAAGACCTCCAAAGGGACATCAGACGTCATCTCTTTAAATTTATTAAGAAAGTTCGAATTTTTGCCTTGTTGGATGAGCCTATCTTGGATGCCATATGTGAGAGGCTAAGGCAAAAAACATATATCAAAGGAAGCAAAATTTTGTATGGTGGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAACGTTGGTGAAGATGGAATTAGTGCTCCCCTTTATGAAGGGAGTGTTTGTGGTGAAGAACTCCTTACATGGTGTCTTGAGCATCCTTTATCAACCAAAGGCTGTGGAAAAGCAAGGATTCCAAGGCAAAAGTTGGTTAGTAACAGGACAGTATATTGCTTAACAAATGTGGAGGCATTTTCCCTAAGAGCAGCAGACCTTGAAGAAGTTACAGGCCTATTTGCAAGATTCTTTAGGAGTTCCCGTGTTCAAGGAGCTATAAGGTACGAATCACCATACTGGAGATGCTTTGCAGCAACAAGCATCCAGGTTGCATGGAGATACAGGATGAAATGTCTTAGTCGTGCTAACACTACACCAGCTAATGAAACATCCAACATTTATAAGGTGTATTAGACACAACACCTGTGCATGCCTGCTAAATGTTGTAAATTCACTGCTTTCTGTTGGGACTCTCTTTTATTTTTGTAACCACAATGTTTAACATATTTTGTTTCCATAGAGAATGAAATAAGGAACAAATGAAAAAGAGGAAGTGCCAAAAGAGGATAAAACTACTATTTTCCAATTTCTGAAGGTGTTAATAACAATATTGAGTGTGTCAAAGGAA 2565 0.3922 MESFEKDEVPILSDIHPKLSKEPSDSKFPRHVSRTRSVSISIPATLTEPYERDTNLVGYTGPLRSQRKTSFNQMSGPLNVTNRPGSLFQQKRVAPEYQTAESNTESFPSSCGMGENDFQNNYAGKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQRNSKASGIFNPEFRTTLYGDVKDWARRVFTFLIPHIPRVMNPHNKLVQQWNKFFAICCLVAIFVDPLFFFLLSMQKENKCIVINWTMTNTLVVLRSMNDFIHFLNIVLQFRLAYVAPESRVVGAGELVDHPKKIALHYLQTSFIIDLFVVLPLPQIFILFVLPKHLGTGSSGANYANSFLRIVILVQYIPRLCRFLPMLISPTGFIFESPWASFFINLFTFMLSGHIVGSWWYLFGLQRVKQCLRDACVTENINGCSKFIDCGHGETEEFLHNNKINWHNWTNSKAAGACFTEDGFRDGYGIFLRAVNLTADHKVMTRYVYSSFWGFQQISTLAGNLSPSYYVPEVLFTVAIIGLGLLLFALLIGNIQNFLQALGRRRLEMSLRRRDVEQWMSHRRLAEDMRRRVRQAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFKFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYGGGLVEKMVFIVRGKLENVGEDGISAPLYEGSVCGEELLTWCLEHPLSTKGCGKARIPRQKLVSNRTVYCLTNVEAFSLRAADLEEVTGLFARFFRSSRVQGAIRYESPYWRCFAATSIQVAWRYRMKCLSRANTTPANETSNIYKVY 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01438 781 Gene3D Helix hairpin bin 532 596 - -
Pste6g01438 781 ProSiteProfiles cAMP/cGMP binding motif profile. 604 679 IPR000595 -
Pste6g01438 781 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 764 - -
Pste6g01438 781 MobiDBLite consensus disorder prediction 1 32 - -
Pste6g01438 781 Gene3D - 206 529 - -
Pste6g01438 781 MobiDBLite consensus disorder prediction 1 34 - -
Pste6g01438 781 Pfam Ion transport protein 205 532 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pste6g01438 781 Gene3D Jelly Rolls 602 726 IPR014710 -
Pste6g01438 781 SMART cnmp_10 604 739 IPR000595 -
Pste6g01438 781 SUPERFAMILY cAMP-binding domain-like 532 727 IPR018490 -
Pste6g01438 781 SUPERFAMILY Voltage-gated potassium channels 197 533 - -
Pste6g01438 781 CDD CAP_ED 604 720 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01438 Pste-Chr6 6248910 6259950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01438 5 677 Ion Channels AT3G17700 58.997 0.0 778