Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01422 AACCTTTTGGTCTTAACCATGACCAACCCAAAACAAGGCTACGCCGGAATCGGCAACCACAGTCCCCCCTCCAAGAAAAAGCACAAGAAACTCCTCCTGACCCTCATGGGCACGCTCGTGGTGGCGGCGTCGGTGGTGGCTATCGTCGCCGGAGTAAAAAACAAAAGCAAAGATTCGGACAAGAAAGATAACAGAAGCAGTCCCCTGACCCTATCGCACGAATCCCAGGCGATCATAAAGAGCGCGTGCAGGTCGACATTGTACCAGGAACTGTGCTTCTCGGCGGTGGCCTCGGAAGCGAAGGAGCCACCGGGACGTGATCCAGCTGTCCCTGAACCTGACAACGCGCGCGGTGGAGCACAACTACTTCACCGTGAAGAAGCTCCTGGGCAGACGCGACCTGACGAAACGAGAAAAACGGCTCTCCACGACTGCCTGGAAACCATCGATGAGACTCTGGACGAGCTCTTAGAGGCCCAACACGAGCTCCACGTGTACCCCAACAAGAAGACGCTCTACCAACACGCCGACGATCTTAAAACTCTTATAAGCGCCGCCATCACTAACCAGGTCACGTGCCTCGACGGTTTCTCGCACGACCACGCTGACAAGCTCGTGAGGAAGGCCTTGGAGGAAGGTCAGGTGCACGTGGAACGCATGTGCAGCAACGCATTGGCCATGACCAAAAACATGACCGACAATGACATTGCCAACTACGAATACAAAATGAGCACTAACAACAATAGTCGGAAGCTACTTCAGCTTGTGGACTGGCCCCACTGGATTTCCGCCTCCGATAGGAGGCTTCTCCAGGCCACCACCGTCAAGGCTGACGTGGTCGTCGCCGCCGACGGTACCGGTGACTTTAAGACCGTGTCGGAGGCCGTTAATGCTGCTCCTTTGAAGAGTAGCAAGAGGTTTGTTATAAGGATTAAGGCTGGGGTCTATAGAGAGAATGTTGATGTCCCTAAGAAGAAGACTAATATCATGTTCTTCGGCGATGGCCGGACCTCCACTATCATCACCGCCAGTAGAAATGTCGTTGACGGCAGCACCACTTTCCACTCTGCCACCGTCGCTGTTGTGGGTGGAAATTTCTTGGCGAGGGACATAACATTCCAAAACACAGCGGGTCCCTCAAAGCACCAAGCTGTGGCCCTACGAGTTGGTGGGGACCTCTCAGCATTTTACAATTGTGACATTCTAGCATACCAAGACACCCTTTATGTCCACAACAATAGGCAATTCTTTGTGAATTGCCTCATTGCTGGGACGGTGGATTTTATATTTGGTAACTCAGCTGTTGTGTTCCAAGACTGTGATATCCATGCTAGGCGTCCTGACTCGGGGCAGAAGAACATGGTGACGGCTCAGGGTAGGGTTGATCCCAACCAAAACACTGGCATTGTGATCCAGAAGTGTAGGATCGCTGCAACTAAGGACCTGGAGTCTGTGAAGAAAAGTTTCAAAACATATCTTGGGAGGCCTTGGAAGGAATACTCTAGGACTGTGATCATGCAGAGTAGTATAAGTGATGTGATTGACCCAGTTGGGTGGCACGAGTGGAATGGCAACTTCGCATTGAGCACTTTGGTTTATAGGGAGTATCAGAACACTGGCCCTGGTGCTGGCACTTCAAATAGGGTTACTTGGAAAGGGTATAAGGTCATTACCGATGCTGCTGAGGCCCGGGGTTTTACTCCTGGAAGCTTCATTGGGGGTTCTAGCTGGTTGTCCTCTACTGGCTTTCCTTTCTCTCTCGGCTTGAGAAATGATGGAACAAAGAGATAG 1791 0.517 NLLVLTMTNPKQGYAGIGNHSPPSKKKHKKLLLTLMGTLVVAASVVAIVAGVKNKSKDSDKKDNRSSPLTLSHESQAIIKSACRSTLYQELCFSAVASEAKEPPGRDPAVPEPDNARGGAQLLHREEAPGQTRPDETRKTALHDCLETIDETLDELLEAQHELHVYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHDHADKLVRKALEEGQVHVERMCSNALAMTKNMTDNDIANYEYKMSTNNNSRKLLQLVDWPHWISASDRRLLQATTVKADVVVAADGTGDFKTVSEAVNAAPLKSSKRFVIRIKAGVYRENVDVPKKKTNIMFFGDGRTSTIITASRNVVDGSTTFHSATVAVVGGNFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIAATKDLESVKKSFKTYLGRPWKEYSRTVIMQSSISDVIDPVGWHEWNGNFALSTLVYREYQNTGPGAGTSNRVTWKGYKVITDAAEARGFTPGSFIGGSSWLSSTGFPFSLGLRNDGTKR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01422 596 Gene3D - 272 589 IPR012334 -
Pste6g01422 596 CDD PMEI-like_3 81 232 - -
Pste6g01422 596 ProSitePatterns Pectinesterase signature 1. 303 322 IPR018040 -
Pste6g01422 596 FunFam Pectinesterase 272 589 - -
Pste6g01422 596 SMART PMEI_2 74 227 IPR006501 GO:0004857
Pste6g01422 596 Pfam Plant invertase/pectin methylesterase inhibitor 78 227 IPR006501 GO:0004857
Pste6g01422 596 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Pste6g01422 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 233 IPR035513 -
Pste6g01422 596 PANTHER PECTINESTERASE 45 579 - -
Pste6g01422 596 FunFam Pectinesterase 121 232 - -
Pste6g01422 596 SUPERFAMILY Pectin lyase-like 273 588 IPR011050 -
Pste6g01422 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 232 IPR035513 -
Pste6g01422 596 Pfam Pectinesterase 278 574 IPR000070 GO:0030599|GO:0042545
Pste6g01422 596 NCBIfam pectinesterase inhibitor domain 131 231 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01422 Pste-Chr6 6184847 6189494 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01422 26 589 Carbohydrate Esterase AT3G14310 66.667 0.0 746