Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01397 TGTTAATGTTAATCCCAATTGGCATCAATTGCATCCCGTTATTCTTCTTGTTCAATCTTCATCTTCCAATCCCAATCCATCCATTGCGTTAGGGTTTTCACAGGTCCAGTTCCTCTTCCTCTCATTCTATTCCACTGCCATTGCTACGTCCATTGTCCTTGATCAGCAAGTGTCTGCGTCCAATGATGCAACGCACCCTCGCAATTCCTCCGTAGTTTAGTATCGTCGTGAAACGACGGATTCTTGGGTGTAGTGAAGTTCGGAACTAACTCCAACAAGCATCTAGGCAAATTTCTTCGTTGTTTTCACAGTGTGTGTCTGTAAGGTACAGCGTTCTCAAACAAAGGATGTTTCCGTTTCATCCTCAAGGAACTCCGAAGCACTCGTGCACTCTTCTCGCTGTGACCTGTGGAACAAGTTTCTCCGAGCAGAAGTCCTCGCAAAATCAGCGCAAATATCCTTTCCCCGAGTTAGTTTCCGCCGGACGCCTTGAGGTTCAAACTCTTCGGAATCCGGAGAAGGAACAGTTTCGGAAAGTTTTGGAGTCGTATCAACCGAATTTTGTTTACTTGCAAGGAGAACAATTAGAAAATGGCGAAGTTGGTCCACTGGTTTGGCAAGAGGTGGAATTATCTGCTTCTGAAGATATAGCAGAGCTATTTGGTTCCACATTGCCGACTGCTGTTTATTTAGAAATACCAAATGGAGAAAGTTGTGCAGAGGCTCTTCATCTTAAGGGAATCCCGTATGTTATATTTTGGAAGAATGTCTTTTCTTGTTATGCTGCCTGCCATTTTCGTCAAGCTTTTCTTTCAGTAGTACAGAGTTCATCGACACATACATGGGATGCTTTCCACCTTGCGCATGCCTCTTTTGAACTTTACTGTGTCCAAAACAATCAAGTACTTCCTACTAATAGGGATGATGCTAATAGTGAAATGGGGCCACATCTTCTTGGCGACTGTCTCAAAATCAATGTTGACCCTCCAGAGATTGATGAAGAGGATGATGACGAAAGTTCCTCAGGTAGTTTGCCTGCCATAAAGATACACGAGGATGAAGTGAACTTGAGGTTTCTCATCTGTGGTGCACCGTCAGCTATTGATGAGTCATTGCTGAGATCTTTGGAGGACGGACTCAGAGCTCTTTTAACTATTGAAGTGCGTGGTTGCAAGCTCCATGGCAAGTTTAGTGCCCCACCGCCACCTCTTCAAGCAGCCGCTTTTTCTCGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGTAGTTCTGCACATATCTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAATCAACTAGTTCATGCACAACTAAACAATGAGGGAAACAAAAAGATCATCTCTGAACCTCGCAGATCTGCTTCTATTGCATGTGGAGCATCTGTATTTGAAGTTTCCATGAAGATTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCCAGTATTCAGGGGTTGCCTATAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTTTATCAAAGTTGCGAGAAAGAGAGCTGTACAAACAAAAATAATATAAATTTTAGCAGTCCTCCTGGTTGGTTGAAACCACCCCCTCCTACCAGAAAAAGGTGTGAACCAAGCCAGGCAAGCCCAGACCTTCATGAAGGGGTCTTTCCAGGGCAGGGCACTGTTCGTAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGATGAACGGGATTAGCACACCATTAACTCCTGCAAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCACATTCGTCGCCATAGAATGACGCCTTTTTGTGGACCTTCCGAGACAGATGGTTTTGATGGCTCCCAAGTAGAGCCTAATTTGTCACTTGTTGCCCCTACAAAGCGTAGTAGTATTGGATCAACATCTGCAACGCATAGAAAATCATTTTCATGTGCAGCTCAATCTAAGCAGGTTATTTCATTGAACCCACTGCCTCTTAAGAAACATGGTTGTGGTAGAGGCCCAGTACAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAATTTCTCATTCTTCGGGGACATAATCGACTGATTCCTCAAGGAGGGCTTACTGAGTTCCCCGATGCCATACTCAATGGCAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGTAATTACACAACAACCAATAGAATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTATCTATTAGAATACGAATTAGCACATGATGATGTTGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGCATATGTGGTGAATGGGCGCACTTCGGCTGTGACCGAAGGCAGGGTCTTGGCGCATTTAAGGATTATGCCAAAACAGATGGACTAGAATATATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGCTAATGGGTATTCTCAAGGGTCAATGTCATCACGACCCCTTTGATAGTTTTCTCCACCCCTTTCTGGAAGAGTGGACAAACTAGTTATCTGCTTTGCTGGATTTATCTGTATTCTATGTTTTAGATAGATTAGTAAAATATAGGATGAAAAAAAATGGAAATTAGGTTTAATCAACACAAATGTCATTAGGAGTAGGCGAACCCCTTCCAGCTTTGTTCTTGATTAAGGGGAGCAAAAATTCCTAATTCAGATATTGGAACTTATACCACTTTAGGATCCCCATCAAACTCTTCATTGTAAGCAGTGAGTTGGAAGTTTTAGTTTATTACGAGTGTCCTATTGTATTGAAAGGAAAATGTATAGACTTGTGC 3021 0.423 MFPFHPQGTPKHSCTLLAVTCGTSFSEQKSSQNQRKYPFPELVSAGRLEVQTLRNPEKEQFRKVLESYQPNFVYLQGEQLENGEVGPLVWQEVELSASEDIAELFGSTLPTAVYLEIPNGESCAEALHLKGIPYVIFWKNVFSCYAACHFRQAFLSVVQSSSTHTWDAFHLAHASFELYCVQNNQVLPTNRDDANSEMGPHLLGDCLKINVDPPEIDEEDDDESSSGSLPAIKIHEDEVNLRFLICGAPSAIDESLLRSLEDGLRALLTIEVRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKNQLVHAQLNNEGNKKIISEPRRSASIACGASVFEVSMKIPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSCEKESCTNKNNINFSSPPGWLKPPPPTRKRCEPSQASPDLHEGVFPGQGTVRKVNEEEKDRKMMNGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGSQVEPNLSLVAPTKRSSIGSTSATHRKSFSCAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVANGYSQGSMSSRPL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01397 781 CDD PHD_ARID4_like 705 756 - -
Pste6g01397 781 SMART ARID_2 592 695 - -
Pste6g01397 781 MobiDBLite consensus disorder prediction 444 477 - -
Pste6g01397 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Pste6g01397 781 CDD ARID 597 695 - -
Pste6g01397 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Pste6g01397 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 778 IPR042293 -
Pste6g01397 781 Gene3D - 593 698 IPR036431 GO:0003677
Pste6g01397 781 SMART bright_3 596 700 IPR001606 GO:0003677
Pste6g01397 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Pste6g01397 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 762 IPR013083 -
Pste6g01397 781 SUPERFAMILY FYVE/PHD zinc finger 691 759 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01397 Pste-Chr6 6052273 6060355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01397 4 770 ARID Transcription Factor Family AT3G43240 60.645 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pste6g01397 ARID 2.2e-14 CL0123