Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01396 ATGAACAGAGGAATTGAAGTTCTTTCTCCAGCCTCTTACCTCCAGAGTTCCAATTGGTTGTTCCAAGAAAGCTTGGGGACCAGGTGGACTCCACAGGAGAACAAGCTGTTTGAGAGTGCTTTGGCTATGTATGACAAGGACACTCCAGACCGTTGGCTGAAGGTGGTAGCCTTGATTCCTGGCAAAACTGTTGGTGATGTGATAAAACAGTACAGAGAACTTGAAGAAGATGTTAGTGTAATTGAATCTGGGTTTATCCCAGTTCCAGGGTACACTAATGATTCCTTCACATTGGAGTGGGTCAAGAATCAAGGATTTGATGAGTTCAGGCAGTTTTATAGTGTTACTGGTAAAAGGAGTTCTTCAACTAGACCATGTGAGCAGGAGAGGAAGAAAGGAGTGCCATGGACTAAAGAGGAGCACAGGCAATTTCTGATGGGTCTTAAGAAGTATGGTAAAGGAGATTGGAGAAACATCTCTCGCAATTTTGTGACCACAAGGACACCAACACAGGTTGCAAGTCATGCTCAGAAGTATTTCATAAGGCAACTAACTGGAGGAAAAGATAAGAAGAGATCAAGTATTCATGACATCACAATGGTCAATCTCCCAGAATTACCAAAATCTCCTTCACCAGAGAGTAATAGATCATTTTCACCAGATCACTCAGTGAAGGATGTGAATCCACCCCAGATTAATCAGAGACTATCCGCCATGGTCAAACAGGAATATGATTGGAACTTGTCTTGTGAGAGTGTGCCTATGCTTTTCAATTCAGCAAATGGAAACATGTTCATGACACCCTTGTGTGGGATTTCTTCATATGGGTCTAAACCACTTCAAGAGCAGTGTTTCCTCAGTGGCTCTTTTCATGGATGCCAATTTGGATCCTATGATACTACTATGCAAATGCAGTCCATGCAAAATGAATGAACTATATATAATGCAGGGTTACCAAAATGCTAAACTTTATTCATTGATGTTGGAATGATTTTTAGATGCTCAATGGTGGATTGGTGGTTTGGTTTTTTGTAAATATGTTGAGAAGGATTCCCAAATTTCCTTTTTATTAGACTATTACCAGTGTTCATATTGTATTTTGATATTAAATTTCTGGGATAAATGATGCAATATCAGAGTTTGGCAGTGATATGCATCAACGTCTACCTAGGCAGAAAGTAATTATCACTAAAACGTGTAGGACA 1205 0.4 MNRGIEVLSPASYLQSSNWLFQESLGTRWTPQENKLFESALAMYDKDTPDRWLKVVALIPGKTVGDVIKQYRELEEDVSVIESGFIPVPGYTNDSFTLEWVKNQGFDEFRQFYSVTGKRSSSTRPCEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKKRSSIHDITMVNLPELPKSPSPESNRSFSPDHSVKDVNPPQINQRLSAMVKQEYDWNLSCESVPMLFNSANGNMFMTPLCGISSYGSKPLQEQCFLSGSFHGCQFGSYDTTMQMQSMQNE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01396 310 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Pste6g01396 310 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Pste6g01396 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Pste6g01396 310 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Pste6g01396 310 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 252 IPR043363 -
Pste6g01396 310 Gene3D - 22 88 - -
Pste6g01396 310 FunFam Transcription factor SRM1 21 88 - -
Pste6g01396 310 SMART sant 132 182 IPR001005 -
Pste6g01396 310 SMART sant 25 77 IPR001005 -
Pste6g01396 310 CDD SANT 135 180 IPR001005 -
Pste6g01396 310 MobiDBLite consensus disorder prediction 208 229 - -
Pste6g01396 310 CDD SANT 28 74 IPR001005 -
Pste6g01396 310 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Pste6g01396 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Pste6g01396 310 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Pste6g01396 310 Gene3D - 134 184 - -
Pste6g01396 310 MobiDBLite consensus disorder prediction 203 229 - -
Pste6g01396 310 FunFam transcription factor MYB1R1 134 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01396 Pste-Chr6 6042619 6044321 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g01396 Myb_DNA-binding 4.5e-12 CL0123