LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g01392	ATGGCTTCTTCTGCAACGAAGGGAAGCAGAAAGAGGAGGAGAAGTACTCAGATAAAGGAAGTTGTGCAGGTAAACCGGCGTCACGTGACATTCTCGAAACGCAAATTAGGGCTCTTCAACAAACTCAGTGAACTCTCTCTTCTATGCCAAGTAGAAACCGCTTTGATCATCACCTCCCAAAACGGGAAGCTCTATTCTTGTGGCTACCCCAACGCCGACGCCGTTATTCGCCGCTACCTCGACGGAGGACAACCCCAACCAGTGGACCGGAAGCAGCAAGAGGCAGTTGAAACCCTAAGGCTAGAGTATGAGGCCTCTCAAAAGCAGTTGAAGGAAGCACAAAAGCGCTTTGAAGAGGTAAAAGAGACACATAAAGACAATGCTAATTTGTGGTTATCTTCTTGGTGGAATCTACCCATTGAGTCTATGGGCTTGGAGAATCTTGAAGAGTTCAGAACCTCCTTGGAAGCTTTGAAGATTAACCTCGTTGGGGCACACCAAGAGAAGCGATACTTATTAAATTCAGTTCCACCAATGCCATCTATTAACATTATTCCATCAACGCCTATGGTTACACCAATTCCACCGCCTCAGTTTCCAAACATGTCCATTTCGCACTTCACTCATTGTTGGAACACTCCTCCAACTTCTACCACTGCTGCTTCCACATTTTCTGCAGGCCGCTACTGA	690	0.4667	MASSATKGSRKRRRSTQIKEVVQVNRRHVTFSKRKLGLFNKLSELSLLCQVETALIITSQNGKLYSCGYPNADAVIRRYLDGGQPQPVDRKQQEAVETLRLEYEASQKQLKEAQKRFEEVKETHKDNANLWLSSWWNLPIESMGLENLEEFRTSLEALKINLVGAHQEKRYLLNSVPPMPSINIIPSTPMVTPIPPPQFPNMSISHFTHCWNTPPTSTTAASTFSAGRY	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g01392	229	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	25	66	IPR002100	GO:0003677\|GO:0046983
	Pste6g01392	229	Coils	Coil	96	123	-	-
	Pste6g01392	229	Gene3D	-	24	102	IPR036879	GO:0003677\|GO:0046983
	Pste6g01392	229	ProSiteProfiles	MADS-box domain profile.	11	71	IPR002100	GO:0003677\|GO:0046983
	Pste6g01392	229	SUPERFAMILY	SRF-like	12	84	IPR036879	GO:0003677\|GO:0046983
	Pste6g01392	229	PRINTS	MADS domain signature	13	33	IPR002100	GO:0003677\|GO:0046983
	Pste6g01392	229	PRINTS	MADS domain signature	48	69	IPR002100	GO:0003677\|GO:0046983
	Pste6g01392	229	PRINTS	MADS domain signature	33	48	IPR002100	GO:0003677\|GO:0046983
	Pste6g01392	229	SMART	madsneu2	11	70	IPR002100	GO:0003677\|GO:0046983
	Pste6g01392	229	Coils	Coil	148	168	-	-
	Pste6g01392	229	PANTHER	MADS BOX PROTEIN	14	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g01392	Pste-Chr6	6034582	6035271	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g01392	6	159	Type I MADS-box Gene Family	AT5G60440	34.568	9.64e-22	89.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Pste6g01392		SRF-TF	6.8e-17	No_clan