Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g01385 ATGGGTTCTTGTTCTGGGGTAAGGAGGGGAAAGACAGTGATAAAAGAAGTTGAGCAGATAAACAGGCGTTACGTGACATTCTCGAAACGCAAGCTAGGGCTCTTCAACAAACTCACCGAACTCTCTATACTATGCAATGTTGAAAGCGCTTTGATCATTACATCCCAAAACGGGAAGCACTATTCTTGTGGCTACCCCGACGTGGACACCGTGATTGGCCGGTACCTCGGAGGAGGGCCTCCGCAGCGGCGCAACCCCGTAAGTAAGAAGGAAGTGGAAAAGCTAAGGGTGGAATATGAGGCGCTTCAGATTCAGTTGAAAGAAGAGCAAAAGCGTTTACAAGATACCAAAGAGAGGCAAAAGGGTAGCTTTTGGTCACCCCCTTGGTGGAATGTCCCCACCGAGGACATGGGTTTGGAGAATCTTCTAGAGTTCAAGAACTCCCTTGAACTTCTCAAGTATAACCTCGTTGGGGCACTCCAAGAGAAGGATATCAATTCTGTTCCATCATCTACTATGCTTCCACCGCCACCCATAACTCCTCCTGCTCCTGCTCCTGCTTTTCCCCATTATTATCGCTAG 582 0.4845 MGSCSGVRRGKTVIKEVEQINRRYVTFSKRKLGLFNKLTELSILCNVESALIITSQNGKHYSCGYPDVDTVIGRYLGGGPPQRRNPVSKKEVEKLRVEYEALQIQLKEEQKRLQDTKERQKGSFWSPPWWNVPTEDMGLENLLEFKNSLELLKYNLVGALQEKDINSVPSSTMLPPPPITPPAPAPAFPHYYR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g01385 193 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Pste6g01385 193 MobiDBLite consensus disorder prediction 168 193 - -
Pste6g01385 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 62 IPR002100 GO:0003677|GO:0046983
Pste6g01385 193 PANTHER MADS BOX PROTEIN 9 156 - -
Pste6g01385 193 MobiDBLite consensus disorder prediction 171 193 - -
Pste6g01385 193 Coils Coil 89 119 - -
Pste6g01385 193 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Pste6g01385 193 SUPERFAMILY SRF-like 8 83 IPR036879 GO:0003677|GO:0046983
Pste6g01385 193 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Pste6g01385 193 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Pste6g01385 193 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Pste6g01385 193 Gene3D - 20 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g01385 Pste-Chr6 6005865 6006446 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g01385 25 153 Type I MADS-box Gene Family AT5G60440 35.766 5.20e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste6g01385 SRF-TF 2.2e-16 No_clan